Evidence map›Paper›PMID 33863805›Full record

ArticleGenome research2021

The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible.

Yue Hao, Makenzie E Mabry, Patrick P Edger, Michael Freeling, Chunfang Zheng, Lingling Jin, Robert VanBuren, Marivi Colle, Hong An, R Shawn Abrahams and 11 more

Abstract read
In one paragraph

Article in Genome research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
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  7. POInTBMC bioinformatics · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Yue HaoBioinformatics Research Center, North Carolina State University, Raleigh, North Carolina 27695, USA.ORCID 0000-0002-5065-8906
Makenzie E MabryDivision of Biological Sciences, University of Missouri-Columbia, Columbia, Missouri 65211, USA.ORCID 0000-0002-6139-9559
Patrick P EdgerDepartment of Horticulture, Michigan State University, East Lansing, Michigan 48824, USA.ORCID 0000-0001-6836-3041
Michael FreelingDepartment of Plant and Microbial Biology, University of California, Berkeley, California 94720, USA.ORCID 0000-0002-7221-8725
Chunfang ZhengDepartment of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario K1N 6N5, Canada.
Lingling JinDepartment of Computer Science, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9, Canada.
Robert VanBurenDepartment of Horticulture, Michigan State University, East Lansing, Michigan 48824, USA.ORCID 0000-0003-2133-2760
Marivi ColleDepartment of Horticulture, Michigan State University, East Lansing, Michigan 48824, USA.ORCID 0000-0002-5722-1328
Hong AnDivision of Biological Sciences, University of Missouri-Columbia, Columbia, Missouri 65211, USA.ORCID 0000-0002-2367-5508
R Shawn AbrahamsDivision of Biological Sciences, University of Missouri-Columbia, Columbia, Missouri 65211, USA.ORCID 0000-0003-1749-2040
Jacob D WashburnPlant Genetics Research Unit, USDA-ARS, Columbia, Missouri 65211, USA.ORCID 0000-0003-0185-7105
Xinshuai QiDepartment of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona 85721, USA.
Kerrie BarryDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.ORCID 0000-0002-8999-6785
Christopher DaumDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.
Shengqiang ShuDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.ORCID 0000-0002-4336-8994
Jeremy SchmutzDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.ORCID 0000-0001-8062-9172
David SankoffDepartment of Mathematics and Statistics, University of Ottawa, Ottawa, Ontario K1N 6N5, Canada.ORCID 0000-0001-8415-5189
Michael S BarkerDepartment of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona 85721, USA.ORCID 0000-0001-7173-1319
Eric LyonsSchool of Plant Sciences, University of Arizona, Tucson, Arizona 85721, USA.ORCID 0000-0002-3348-8845
J Chris PiresDivision of Biological Sciences, University of Missouri-Columbia, Columbia, Missouri 65211, USA.ORCID 0000-0001-9682-2639
Gavin C ConantBioinformatics Research Center, North Carolina State University, Raleigh, North Carolina 27695, USA.ORCID 0000-0002-8677-4933

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The members of the tribe Brassiceae share a whole-genome triplication (WGT), and one proposed model for its formation is a two-step pair of hybridizations producing hexaploid descendants. However, evidence for this model is incomplete, and the evolutionary and functional constraints that drove evolution after the hexaploidy are even less understood. Here, we report a new genome sequence of

Indexed as

GenomePolyploidyEvolution, MolecularGenome, PlantHumansHybridization, GeneticPhylogeny

Identifiers

PMID33863805
PMCPMC8092008

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.