Evidence map›Paper›PMID 33863273›Full record

ArticleBMC molecular and cell biology2021

Association of Sonic Hedgehog with the extracellular matrix requires its zinc-coordination center.

Carina Jägers, Henk Roelink

Open access · goldAbstract read
In one paragraph

Article in BMC molecular and cell biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Carina JägersUniversity of California, Department of Cell and Molecular Biology, Berkeley, CA, USA.
Henk RoelinkUniversity of California, Department of Cell and Molecular Biology, Berkeley, CA, USA. roelink@berkeley.edu.
University of California, Berkeley · US

Funding

Sonic Hedgehog is a Calcium-regulated Zinc peptidaseR01GM117090 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROELINK, HENK · 2016 to 2022
$1.9M
NIGMS NIH HHS R01 GM117090
6 · The paper itself

Abstract

backgroundSonic Hedgehog (Shh) has a catalytic cleft characteristic for zinc metallopeptidases and has significant sequence similarities with some bacterial peptidoglycan metallopeptidases defining a subgroup within the M15A family that, besides having the characteristic zinc coordination motif, can bind two calcium ions. Extracellular matrix (ECM) components in animals include heparan-sulfate proteoglycans, which are analogs of bacterial peptidoglycan and are involved in the extracellular distribution of Shh.

resultsWe found that the zinc-coordination center of Shh is required for its association to the ECM as well as for non-cell autonomous signaling. Association with the ECM requires the presence of at least 0.1 μM zinc and is prevented by mutations affecting critical conserved catalytical residues. Consistent with the presence of a conserved calcium binding domain, we find that extracellular calcium inhibits ECM association of Shh.

conclusionsOur results indicate that the putative intrinsic peptidase activity of Shh is required for non-cell autonomous signaling, possibly by enzymatically altering ECM characteristics.

Indexed as

Amino Acid MotifsAnimalsBacterial ProteinsCalciumCells, CulturedCholesterolExtracellular MatrixHedgehog ProteinsHEK293 CellsHumansMiceMutationPeptide HydrolasesProtein DomainsSignal TransductionZincBacterial ProteinsCalciumCholesterolHedgehog ProteinsPeptide HydrolasesZincBacHhExtracellular matrixShh signalingZinc metallopeptidases

Identifiers

PMID33863273
PMCPMC8052667
OpenAlexW3154577726

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.