Evidence map›Paper›PMID 33859386›Full record

ArticleNature biomedical engineering2021

Optimization of therapeutic antibodies by predicting antigen specificity from antibody sequence via deep learning.

Derek M Mason, Simon Friedensohn, Cédric R Weber, Christian Jordi, Bastian Wagner, Simon M Meng, Roy A Ehling, Lucia Bonati, Jan Dahinden, Pablo Gainza and 2 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Nature biomedical engineering, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 159 papers.

0numbers the graph read from it
0cells of the map it votes in
159citing papers in PubMed
30.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

159 citing papers in PubMed, 303 citations in OpenAlex.

  1. Article
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  4. Multiobjective VScience advances · 2026
    Article
  5. Review
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  7. A Synthetic Platform for Antibody Junctional Diversification Beyond Natural Constraints.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
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  20. Article

99 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Derek M MasonDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.ORCID http://orcid.org/0000-0002-7038-5319
Simon FriedensohnDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.
Cédric R WeberDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.ORCID http://orcid.org/0000-0003-4802-8996
Christian JordiDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.ORCID http://orcid.org/0000-0003-4617-6012
Bastian WagnerDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.
Simon M MengDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.
Roy A EhlingDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.ORCID http://orcid.org/0000-0002-4879-8168
Lucia BonatiDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.
Jan DahindenDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland.
Pablo GainzaInstitute of Bioengineering, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.ORCID http://orcid.org/0000-0001-9197-0982
Bruno E CorreiaInstitute of Bioengineering, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-7377-8636
Sai T ReddyDepartment of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland. sai.reddy@ethz.ch.ORCID http://orcid.org/0000-0002-9177-0857
ETH Zurich · CHUniversity of Basel · CHÉcole Polytechnique Fédérale de Lausanne · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The optimization of therapeutic antibodies is time-intensive and resource-demanding, largely because of the low-throughput screening of full-length antibodies (approximately 1 × 10

Indexed as

Deep LearningAmino Acid SequenceAnimalsAntibody AffinityAntibody SpecificityAntigensCRISPR-Cas SystemsErb-b2 Receptor Tyrosine KinasesHumansHybridomasMutagenesis, Site-DirectedProtein BindingProtein EngineeringRecombinational DNA RepairSequence Analysis, ProteinTrastuzumabAntigensERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesTrastuzumab

Identifiers

PMID33859386
OpenAlexW3156522942

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.