Evidence map›Paper›PMID 33859306›Full record

ArticleScientific reports2021

Transcriptional changes and preservation of bone mass in hibernating black bears.

Anna V Goropashnaya, Øivind Tøien, Thiruvarangan Ramaraj, Anitha Sundararajan, Faye D Schilkey, Brian M Barnes, Seth W Donahue, Vadim B Fedorov

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Anna V GoropashnayaInstitute of Arctic Biology, University of Alaska Fairbanks, 2140 Koyukuk Dr., Fairbanks, AK, 99775, USA.
Øivind TøienInstitute of Arctic Biology, University of Alaska Fairbanks, 2140 Koyukuk Dr., Fairbanks, AK, 99775, USA.
Thiruvarangan RamarajSchool of Computing, DePaul University, Chicago, IL, USA.
Anitha SundararajanNational Center for Genome Resources, 2935 Rodeo Park Dr. East, Santa Fe, NM, 87505, USA.
Faye D SchilkeyNational Center for Genome Resources, 2935 Rodeo Park Dr. East, Santa Fe, NM, 87505, USA.
Brian M BarnesInstitute of Arctic Biology, University of Alaska Fairbanks, 2140 Koyukuk Dr., Fairbanks, AK, 99775, USA.
Seth W DonahueDepartment of Biomedical Engineering, University of Massachusetts, 240 Thatcher Road, Amherst, MA, 01003, USA.
Vadim B FedorovInstitute of Arctic Biology, University of Alaska Fairbanks, 2140 Koyukuk Dr., Fairbanks, AK, 99775, USA. vfedorov@alaska.edu.
University of Alaska Fairbanks · USNational Center for Genome Resources · USDePaul University · USUniversity of Massachusetts Amherst · US

Funding

The Administrative CoreP20GM103395 · NIGMS · UNIVERSITY OF ALASKA FAIRBANKS · PI BRIAN M BARNES · 2012 to 2026
$66.1M
NM-INBRE Sequencing and Bioinformatics CoreP20GM103451 · NIGMS · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI Charlotte C. Gard · 2012 to 2026
$61.2M
Renovation of LARS for Arctic Ground Squirrel BreedingP20GM130443 · NIGMS · UNIVERSITY OF ALASKA FAIRBANKS · PI Maegan M Weltzin · 2019 to 2026
$16.4M
Overcoming Disuse Atrophy and Osteoporosis in Hibernating MammalsR21AR064995 · NIAMS · UNIVERSITY OF ALASKA FAIRBANKS · PI FEDOROV, VADIM · 2014 to 2015
$363k
NIAMS NIH HHS R21 AR064995NIGMS NIH HHS P20 GM103395NIGMS NIH HHS P20 GM103451NIGMS NIH HHS P20 GM130443
6 · The paper itself

Abstract

Physical inactivity leads to losses of bone mass and strength in most mammalian species. In contrast, hibernating bears show no bone loss over the prolonged periods (4-6 months) of immobility during winter, which suggests that they have adaptive mechanisms to preserve bone mass. To identify transcriptional changes that underlie molecular mechanisms preventing disuse osteoporosis, we conducted a large-scale gene expression screening in the trabecular bone and bone marrow, comparing hibernating and summer active bears through sequencing of the transcriptome. Gene set enrichment analysis showed a coordinated down-regulation of genes involved in bone resorption, osteoclast differentiation and signaling, and apoptosis during hibernation. These findings are consistent with previous histological findings and likely contribute to the preservation of bone during the immobility of hibernation. In contrast, no significant enrichment indicating directional changes in gene expression was detected in the gene sets of bone formation and osteoblast signaling in hibernating bears. Additionally, we revealed significant and coordinated transcriptional induction of gene sets involved in aerobic energy production including fatty acid beta oxidation, tricarboxylic acid cycle, oxidative phosphorylation, and mitochondrial metabolism. Mitochondrial oxidation was likely up-regulated by transcriptionally induced AMPK/PGC1α pathway, an upstream stimulator of mitochondrial function.

Indexed as

Adenylate KinaseAnimalsApoptosisBone and BonesBone DensityBone ResorptionCell DifferentiationGene ExpressionHibernationMitochondriaOsteoclastsOsteogenesisOxidation-ReductionPeroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alphaSignal TransductionTranscription, GeneticAdenylate KinasePeroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha

Identifiers

PMID33859306
PMCPMC8050052
OpenAlexW3155348892

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.