Evidence map›Paper›PMID 33859035›Full record

ArticleScience (New York, N.Y.)2021

Decoupling transcription factor expression and activity enables dimmer switch gene regulation.

C Ricci-Tam, I Ben-Zion, J Wang, J Palme, A Li, Y Savir, M Springer

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Construction of a globally modular recombinantSynthetic and systems biotechnology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Context dependent activity of p63-bound gene regulatory elements.bioRxiv : the preprint server for biology · 2024
    Article
  8. Article
  9. Article
  10. Machine learning enables identification of an alternative yeast galactose utilization pathway.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Perfect adaptation achieved by transport limitations governs the inorganic phosphate response inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

C Ricci-TamDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0002-6549-1838
I Ben-ZionDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0003-4423-7870
J WangDepartment of Chemical Engineering, University of Washington, Seattle, WA, USA.ORCID https://orcid.org/0000-0002-1139-6640
J PalmeDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0001-5897-1334
A LiDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0003-3933-588X
Y SavirDepartment of Physiology, Biophysics, and Systems Biology, Technion, Haifa, Israel.
M SpringerDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA. Michael_Springer@hms.harvard.edu.ORCID https://orcid.org/0000-0002-3970-6380

Funding

Determining the source of missing heritabilityR01GM120122 · NIGMS · HARVARD MEDICAL SCHOOL · PI SPRINGER, MICHAEL · 2016 to 2020
$1.7M
NIGMS NIH HHS R01 GM120122
6 · The paper itself

Abstract

Gene-regulatory networks achieve complex mappings of inputs to outputs through mechanisms that are poorly understood. We found that in the galactose-responsive pathway in

Indexed as

Gene Expression Regulation, FungalDNA-Binding ProteinsGalactokinaseGalactoseGene Regulatory NetworksGenetic FitnessGlucoseMetabolic Networks and PathwaysModels, GeneticPromoter Regions, GeneticRepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsTranscription, GeneticDNA-Binding ProteinsGAL1 protein, S cerevisiaeGAL4 protein, S cerevisiaeGalactokinaseGalactoseGlucoseMIG1 protein, S cerevisiaeRepressor ProteinsSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID33859035
PMCPMC8173539

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.