Evidence map›Paper›PMID 33858503›Full record

ArticleBMC research notes2021

The complete genome sequence of Listeria monocytogenes strain S2542 and expression of selected genes under high-pressure processing.

Ilhan Cem Duru, Florentina Ionela Bucur, Margarita Andreevskaya, Anne Ylinen, Peter Crauwels, Leontina Grigore-Gurgu, Bahareh Nikparvar, Tone Mari Rode, Pia Laine, Lars Paulin and 6 more

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Article in BMC research notes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Ilhan Cem Duru *Institute of Biotechnology, University of Helsinki, Helsinki, Finland. ilhan.duru@helsinki.fi.ORCID http://orcid.org/0000-0003-3409-5215
Florentina Ionela Bucur *Faculty of Food Science and Engineering, Dunarea de Jos University of Galati, Galati, Romania.ORCID http://orcid.org/0000-0002-0488-8524
Margarita Andreevskaya *Institute of Biotechnology, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0000-0003-4052-3861
Anne YlinenInstitute of Biotechnology, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0000-0001-7423-7789
Peter CrauwelsInstitute of Microbiology and Biotechnology, Ulm, University, Albert-Einstein-Allee 11, 89081, Ulm, Germany.
Leontina Grigore-GurguFaculty of Food Science and Engineering, Dunarea de Jos University of Galati, Galati, Romania.ORCID http://orcid.org/0000-0003-3746-7029
Bahareh NikparvarDepartment of Chemical Engineering, Norwegian University of Science and Technology (NTNU), Trondheim, Norway.ORCID http://orcid.org/0000-0003-4916-6573
Tone Mari RodeDepartment of Process Technology, Nofima-Norwegian Institute of Food, Fisheries and Aquaculture Research, 4068, Stavanger, Norway.ORCID http://orcid.org/0000-0002-8695-2920
Pia LaineInstitute of Biotechnology, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0000-0002-3727-8749
Lars PaulinInstitute of Biotechnology, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0000-0003-0923-1254
Trond LøvdalDepartment of Process Technology, Nofima-Norwegian Institute of Food, Fisheries and Aquaculture Research, 4068, Stavanger, Norway.ORCID http://orcid.org/0000-0002-9155-5698
Christian U RiedelInstitute of Microbiology and Biotechnology, Ulm, University, Albert-Einstein-Allee 11, 89081, Ulm, Germany.ORCID http://orcid.org/0000-0001-7134-7085
Nadav BarDepartment of Chemical Engineering, Norwegian University of Science and Technology (NTNU), Trondheim, Norway.
Daniela Borda *Faculty of Food Science and Engineering, Dunarea de Jos University of Galati, Galati, Romania.ORCID http://orcid.org/0000-0002-5354-0196
Anca Ioana Nicolau *Faculty of Food Science and Engineering, Dunarea de Jos University of Galati, Galati, Romania.ORCID http://orcid.org/0000-0001-8018-1478
Petri Auvinen *Institute of Biotechnology, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0000-0002-3947-4778

Funding

Academy of Finland 307856Academy of Finland 311717ERA-IB2 consortium ERA-IB-16- 247 014German Ministry for Education 031B0268
6 · The paper itself

Abstract

objectivesThe study aims to generate the whole genome sequence of L. monocytogenes strain S2542 and to compare it to the genomes of strains RO15 and ScottA. In addition, we aimed to compare gene expression profiles of L. monocytogenes strains S2542, ScottA and RO15 after high-pressure processing (HPP) using ddPCR.

resultsThe whole genome sequence of L. monocytogenes S2542 indicates that this strain belongs to serotype 4b, in contrast to the previously reported serotype 1/2a. Strain S2542 appears to be more susceptible to the treatment at 400 MPa compared to RO15 and ScottA strains. In contrast to RO15 and ScottA strains, viable cell counts of strain S2542 were below the limit of detection after HPP (400 MPa/8 min) when stored at 8 °C for 24 and 48 h. The transcriptional response of all three strains to HPP was not significantly different.

Indexed as

Listeria monocytogenesFood MicrobiologyGenetic TechniquesFoodborne pathogenFood safetyGene expressionGenome comparisonHigh-pressure processingListeriaStress recovery

Identifiers

PMID33858503
PMCPMC8048338

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.