Evidence map›Paper›PMID 33857832›Full record

ArticleStem cell research2021

A stress-free strategy to correct point mutations in patient iPS cells.

Jingli Cai, Elizabeth Kropf, Ya-Ming Hou, Lorraine Iacovitti

Open access · goldAbstract read
In one paragraph

Article in Stem cell research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. On the Road from Phenotypic Plasticity to Stem Cell Therapy.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
    Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jingli CaiDepartment of Neuroscience Vickie & Jack Farber Institute for Neuroscience, Sidney Kimmel Medical College, Thomas Jefferson University, 900 Walnut Street, JHN Suite 461, Philadelphia, PA 19107, USA.
Elizabeth KropfDepartment of Neuroscience Vickie & Jack Farber Institute for Neuroscience, Sidney Kimmel Medical College, Thomas Jefferson University, 900 Walnut Street, JHN Suite 461, Philadelphia, PA 19107, USA.
Ya-Ming HouDepartment of Biochemistry and Molecular Biology, Sidney Kimmel Medical College, Thomas Jefferson University, 233 South 10th Street, BLSB Suite 220, Philadelphia, PA 19107, USA.
Lorraine IacovittiDepartment of Neuroscience Vickie & Jack Farber Institute for Neuroscience, Sidney Kimmel Medical College, Thomas Jefferson University, 900 Walnut Street, JHN Suite 461, Philadelphia, PA 19107, USA. Electronic address: lorraine.iacovitti@jefferson.edu.
Thomas Jefferson University · US

Funding

tRNA in codon usageR35GM134931 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI HOU, YA-MING · 2020 to 2025
$5.4M
Using reporter human iPS cells to study fate, function and Parkinson's diseaseR01NS075839 · NINDS · THOMAS JEFFERSON UNIVERSITY · PI IACOVITTI, LORRAINE · 2012 to 2021
$3.8M
The Role of the De-condensed Structure of Nascent Chromatin During T Cell DifferentiationR01AI125650 · NIAID · THOMAS JEFFERSON UNIVERSITY · PI IACOVITTI, LORRAINE, MAZO, ALEXANDER M · 2017 to 2021
$3.1M
A patient-derived CMT cell modelR03NS107751 · NINDS · THOMAS JEFFERSON UNIVERSITY · PI HOU, YA-MING, IACOVITTI, LORRAINE · 2018 to 2019
$156k
NIAID NIH HHS R01 AI125650NIGMS NIH HHS R35 GM134931NINDS NIH HHS R01 NS075839NINDS NIH HHS R03 NS107751
6 · The paper itself

Abstract

When studying patient specific induced pluripotent stem cells (iPS cells) as a disease model, the ideal control is an isogenic line that has corrected the point mutation, instead of iPS cells from siblings or other healthy subjects. However, repairing a point mutation in iPS cells even with the newly developed CRISPR-Cas9 technique remains difficult and time-consuming. Here we report a strategy that makes the Cas9 "knock-in" methodology both hassle-free and error-free. Instead of selecting a Cas9 recognition site close to the point mutation, we chose a site located in the nearest intron. We constructed a donor template with the fragment containing the corrected point mutation as one of the homologous recombination arms flanking a PGK-Puro

Indexed as

Induced Pluripotent Stem CellsClone CellsClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Cas SystemsHomologous RecombinationHumansMutationPoint MutationCRISPR-Cas9Gene targetingIsogenic iPS cellsPoint mutation

Identifiers

PMID33857832
PMCPMC8283763
OpenAlexW3152896611

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.