Evidence map›Paper›PMID 33855675›Full record

Trial reportJournal of clinical immunology2021

Abnormal SCID Newborn Screening and Spontaneous Recovery Associated with a Novel Haploinsufficiency IKZF1 Mutation.

Hye Sun Kuehn, Nicholas J Gloude, David Dimmock, Mari Tokita, Meredith Wright, Sergio D Rosenzweig, Cathleen Collins

Registry-linked trialOpen access · greenAbstract readClinical Trial
In one paragraph

Trial report in Journal of clinical immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03385876 (Rapid Whole Genome Sequencing), which is not on this map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03385876 naenrolling by invitationnot on this map

Rapid Whole Genome Sequencing (rWGS): Rapid Genomic Sequencing for Acutely Ill Patients and the Collection, Storage, Analysis, and Distribution of Biological Samples, Genomic and Clinical Data

TypeinterventionalSponsorRady Pediatric Genomics & Systems Medicine InstituteRan2017 to 2050Enrolled100,000ConditionsGenetic Diseases, Genetic SyndromeArmsGenomic sequencing and molecular diagnostic results, if any
3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. IKZF-associated inborn errors of immunity.Journal of human immunity · 2025
    Review
  2. Article
  3. Review
  4. Case report:Frontiers in immunology · 2023
    Article
  5. Nature and nurture: understanding phenotypic variation in inborn errors of immunity.Frontiers in cellular and infection microbiology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Hye Sun Kuehn *Immunology Service, Department of Laboratory Medicine, NIH Clinical Center, National Institutes of Health, Building 10, Rm 2C306, 10 Center Drive, MSC1508, Bethesda, MD, USA.
Nicholas J Gloude *Division of Hematology Oncology, Department of Pediatrics, University of California San Diego, San Diego, CA, USA.
David DimmockRady Children's Institute for Genomic Medicine, San Diego, CA, USA.
Mari TokitaRady Children's Institute for Genomic Medicine, San Diego, CA, USA.
Meredith WrightRady Children's Institute for Genomic Medicine, San Diego, CA, USA.
Sergio D Rosenzweig *Immunology Service, Department of Laboratory Medicine, NIH Clinical Center, National Institutes of Health, Building 10, Rm 2C306, 10 Center Drive, MSC1508, Bethesda, MD, USA. srosenzweig@cc.nih.gov.ORCID 0000-0002-5550-9678
Cathleen Collins *Rady Children's Hospital San Diego, San Diego, CA, USA.
Children’s Institute · USNational Institutes of Health Clinical Center · USUniversity of California San Diego · US

Funding

Studies of Inherited Causes of Fungal SusceptabilityZIAAI001122 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI ROSENZWEIG, SERGIO · 2010 to 2025
$26.0M
ConProject-001U19HD077693 · NICHD · RADY PEDIATRIC GENOMICS & SYSTEMS MEDICINE INSTITUTE · PI KINGSMORE, STEPHEN FRANCIS · 2013 to 2018
$6.2M
Mutation Analysis Of Selected Lymphoid Immune DisordersZIACL010304 · CLC · CLINICAL CENTER · PI ROSENZWEIG, SERGIO · 2009 to 2025
$0k
Intramural NIH HHS Z99 CL999999Intramural NIH HHS ZIA AI001122Intramural NIH HHS ZIA CL010304NICHD NIH HHS U19 HD077693NICHD NIH HHS U19HD077693NIH HHS 00-000-000
6 · The paper itself

Abstract

purposeIKAROS, encoded by IKZF1, is a member of the IKAROS family of zinc-finger transcription factors playing critical roles in lymphocyte development, differentiation, and tumor suppression. Several studies demonstrated that IKZF1 mutations affecting DNA binding or homo-/hetero-dimerization are mostly associated with common variable immunodeficiency, combined immunodeficiency, or hematologic manifestations. Herein we report a likely de novo, nonsense IKZF1 mutation (p.C182*) in a baby with low T cell receptor excision circles (TREC) identified by newborn screening testing for severe combined immunodeficiency. The patient also presented a profound B cell deficiency at birth.

methodsGenetic, functional, immunologic, and clinical outcome data associated with this patient and her mutation were evaluated.

resultsMutant p.C182* was detected in the cytoplasm of the patient's primary cells, in contrast to wild type (WT) IKAROS protein, only detected in the nucleus. Functional in vitro assessments revealed that p.C182* was less stable than WT IKAROS protein and failed to bind to its target DNA binding sequence and dimerize with WT IKAROS protein, resulting in impaired pericentromeric targeting and transcriptional repression by means of haploinsufficiency. During follow-up, while a spontaneous recovery of TREC and T cells was observed, B cells improved but not to sustained normal ranges.

conclusionsPatients with IKAROS-associated diseases can present with SCID-like TREC values through newborn screening testing. IKZF1 mutations should be added to the low TREC differential, although spontaneous recovery has to be considered.

Indexed as

B-LymphocytesCommon Variable ImmunodeficiencyDNAHaploinsufficiencyHEK293 CellsHumansIkaros Transcription FactorInfant, NewbornMutationNeonatal ScreeningPrimary Immunodeficiency DiseasesSevere Combined ImmunodeficiencyT-LymphocytesDNAIkaros Transcription FactorIKZF1 protein, humanB cellsCIDCVIDlymphopeniaNBST cellsTREC

Identifiers

PMID33855675
PMCPMC11002654
OpenAlexW3154172030

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.