Evidence map›Paper›PMID 33854845›Full record

ArticlePeerJ2021

Characterization of the first vaginal

Marcelle Oliveira de Almeida, Rodrigo Carvalho, Flavia Figueira Aburjaile, Fabio Malcher Miranda, Janaína Canário Cerqueira, Bertram Brenig, Preetam Ghosh, Rommel Ramos, Rodrigo Bentes Kato, Siomar de Castro Soares and 3 more

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 2 pooled it
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 2 syntheses or guidelines pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Review
  5. Article
  6. Probiogenomic In-Silico Analysis and Safety Assessment ofInternational journal of molecular sciences · 2022
    Article
  7. Microbiome research reports · 2022
    Article
  8. Genomic Characterization ofFrontiers in bioinformatics · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Marcelle Oliveira de AlmeidaDepartment of Genetics, Ecology, and Evolution, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.ORCID 0000-0002-8557-3865
Rodrigo CarvalhoDepartment of Genetics, Ecology, and Evolution, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.
Flavia Figueira AburjaileDepartment of Genetics, Ecology, and Evolution, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.ORCID 0000-0002-1067-1882
Fabio Malcher MirandaDepartment of Genetics, Ecology, and Evolution, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.ORCID 0000-0002-6823-5995
Janaína Canário CerqueiraDepartment of Genetics, Ecology, and Evolution, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.
Bertram BrenigInstitute of Veterinary Medicine, University of Göttingen, Göttingen, Germany.ORCID 0000-0002-7635-9656
Preetam GhoshDepartment of Computer Science, Virginia Commonwealth University, Richmond, VA, USA.ORCID 0000-0003-3880-5886
Rommel RamosDepartment of Genetics, Federal University of Pará, Belém, Pará, Brazil.ORCID 0000-0002-8032-1474
Rodrigo Bentes KatoPost-graduation Program in Bioinformatics, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.
Siomar de Castro SoaresDepartment of Immunology, Microbiology, and Parasitology, Federal University of Triângulo Mineiro, Uberaba, Minas Gerais, Brazil.ORCID 0000-0001-7299-3724
Artur SilvaDepartment of Genetics, Federal University of Pará, Belém, Pará, Brazil.ORCID 0000-0002-4082-1132
Vasco AzevedoDepartment of Genetics, Ecology, and Evolution, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.ORCID 0000-0002-4775-2280
Marcus Vinicius Canário VianaDepartment of Genetics, Ecology, and Evolution, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.
Universidade Federal de Minas Gerais · BRUniversidade Federal do Pará · BRUniversidade Federal do Triângulo Mineiro · BRUniversity of Göttingen · DEVirginia Commonwealth University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

background

methodsThe four genomes were sequenced, assembled using ten different strategies and automatically annotated. The functional characterization was performed by bioinformatics tools comparing with known probiotic strains. Moreover, it was selected one representative strain (

resultsGenes involved in probiotic effects such as lactic acid production, hydrogen peroxide, bacteriocins, and adhesin were identified. Three hemolysins and putrescine production were predicted, although these features are also present in other probiotic strains. The four genomes presented no plasmids, but 14 known families insertion sequences and several prophages were detected. However, none of the mobile genetic elements contained antimicrobial resistance genes. The genomes harbor a CRISPR-Cas subtype II-A system that is probably inactivated due to fragmentation of the genes

Indexed as

GenomicsLactobacillus

Identifiers

PMID33854845
PMCPMC7955673
OpenAlexW3134481718

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.