Evidence map›Paper›PMID 33853520›Full record

ArticleBMC genomics2021

Analysis of temporal gene regulation of Listeria monocytogenes revealed distinct regulatory response modes after exposure to high pressure processing.

Bahareh Nikparvar, Margarita Andreevskaya, Ilhan C Duru, Florentina I Bucur, Leontina Grigore-Gurgu, Daniela Borda, Anca I Nicolau, Christian U Riedel, Petri Auvinen, Nadav Bar

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 4 countries.

Bahareh NikparvarDepartment of Chemical Engineering, Norwegian University of Science and Technology, Trondheim, Norway.
Margarita AndreevskayaInstitute of Biotechnology, University of Helsinki, Helsinki, Finland.
Ilhan C DuruInstitute of Biotechnology, University of Helsinki, Helsinki, Finland.
Florentina I BucurFaculty of Food Science and Engineering, Dunarea de Jos University of Galati, Galati, Romania.
Leontina Grigore-GurguFaculty of Food Science and Engineering, Dunarea de Jos University of Galati, Galati, Romania.
Daniela BordaFaculty of Food Science and Engineering, Dunarea de Jos University of Galati, Galati, Romania.
Anca I NicolauFaculty of Food Science and Engineering, Dunarea de Jos University of Galati, Galati, Romania.
Christian U RiedelInstitute of Microbiology and Biotechnology, Ulm University, Ulm, Germany.
Petri AuvinenInstitute of Biotechnology, University of Helsinki, Helsinki, Finland.
Nadav BarDepartment of Chemical Engineering, Norwegian University of Science and Technology, Trondheim, Norway. nadi.bar@ntnu.no.
"Dunarea de Jos" University of Galati · ROUniversity of Helsinki · FINorwegian University of Science and Technology · NOUniversität Ulm · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe pathogen Listeria (L.) monocytogenes is known to survive heat, cold, high pressure, and other extreme conditions. Although the response of this pathogen to pH, osmotic, temperature, and oxidative stress has been studied extensively, its reaction to the stress produced by high pressure processing HPP (which is a preservation method in the food industry), and the activated gene regulatory network (GRN) in response to this stress is still largely unknown.

resultsWe used RNA sequencing transcriptome data of L. monocytogenes (ScottA) treated at 400 MPa and 8

conclusionsOur findings suggest that the timely activation of TFs associated with an immediate stress response, followed by the expression of genes for repair purposes, and then re-growth and metabolism, could be a strategy of L. monocytogenes to survive and recover extreme HPP conditions. We believe that our results give a better understanding of L. monocytogenes behavior after exposure to high pressure that may lead to the design of a specific knock-out process to target the genes or mechanisms. The results can help the food industry select appropriate HPP conditions to prevent L. monocytogenes recovery during food storage.

Indexed as

ListeriaListeria monocytogenesFood HandlingFood MicrobiologyFood StorageGene regulatory networkHigh pressure processingListeria monocytogenesNetwork component analysisTarget geneTranscription factor

Identifiers

PMID33853520
PMCPMC8045354
OpenAlexW3153736086

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.