Evidence map›Paper›PMID 33852194›Full record

ArticleEMBO reports2021

The deubiquitinase USP36 promotes snoRNP group SUMOylation and is essential for ribosome biogenesis.

Hyunju Ryu, Xiao-Xin Sun, Yingxiao Chen, Yanping Li, Xiaoyan Wang, Roselyn S Dai, Hong-Ming Zhu, John Klimek, Larry David, Lev M Fedorov and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 35 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Hyunju RyuDepartment of Molecular & Medical Genetics, Oregon Health & Science University, Portland, OR, USA.ORCID 0000-0002-3188-7092
Xiao-Xin SunDepartment of Molecular & Medical Genetics, Oregon Health & Science University, Portland, OR, USA.
Yingxiao ChenDepartment of Molecular & Medical Genetics, Oregon Health & Science University, Portland, OR, USA.
Yanping LiDepartment of Molecular & Medical Genetics, Oregon Health & Science University, Portland, OR, USA.
Xiaoyan WangDepartment of Molecular & Medical Genetics, Oregon Health & Science University, Portland, OR, USA.
Roselyn S DaiDepartment of Molecular & Medical Genetics, Oregon Health & Science University, Portland, OR, USA.
Hong-Ming ZhuDepartment of Molecular & Medical Genetics, Oregon Health & Science University, Portland, OR, USA.
John KlimekDepartment of Chemical Physiology & Biochemistry, School of Medicine, Oregon Health & Science University, Portland, OR, USA.
Larry DavidDepartment of Chemical Physiology & Biochemistry, School of Medicine, Oregon Health & Science University, Portland, OR, USA.
Lev M FedorovOHSU Transgenic Mouse Models Shared Resource, Oregon Health & Science University, Portland, OR, USA.
Yoshiaki AzumaDepartment of Molecular Biosciences, University of Kansas, Lawrence, KS, USA.ORCID 0000-0002-9634-6676
Rosalie C SearsDepartment of Molecular & Medical Genetics, Oregon Health & Science University, Portland, OR, USA.
Mu-Shui DaiDepartment of Molecular & Medical Genetics, Oregon Health & Science University, Portland, OR, USA.ORCID 0000-0001-9031-6962
Oregon Health & Science University · USUniversity of Kansas · US

Funding

Understanding the origins of rapid recurrence of pancreatic cancer after resectionP30CA069533 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Luiz Eduardo Bertassoni · 1997 to 2026
$60.5M
Proteomics CoreP30EY010572 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI TED S ACOTT · 1995 to 2026
$19.4M
Hydroxylation regulation of c-MycR01CA186241 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Mu-Shui Dai, ROSALIE C SEARS · 2015 to 2026
$4.2M
Role of Otubain 1 in the p53 PathwayR01CA160474 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI DAI, MU-SHUI · 2012 to 2016
$1.6M
Novel roles for USP36 in ribosome biogenesisR01GM130604 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI DAI, MU-SHUI · 2019 to 2022
$1.2M
LTQ XL Linear Ion Trap Mass SpectrometerS10RR025571 · NCRR · OREGON HEALTH & SCIENCE UNIVERSITY · PI DAVID, LARRY L · 2009 to 2009
$389k
NCI NIH HHS P30 CA069533NCI NIH HHS R01 CA160474NCI NIH HHS R01 CA186241NCRR NIH HHS S10 RR025571NEI NIH HHS P30 EY010572NIGMS NIH HHS R01 GM130604
6 · The paper itself

Abstract

SUMOylation plays a crucial role in regulating diverse cellular processes including ribosome biogenesis. Proteomic analyses and experimental evidence showed that a number of nucleolar proteins involved in ribosome biogenesis are modified by SUMO. However, how these proteins are SUMOylated in cells is less understood. Here, we report that USP36, a nucleolar deubiquitinating enzyme (DUB), promotes nucleolar SUMOylation. Overexpression of USP36 enhances nucleolar SUMOylation, whereas its knockdown or genetic deletion reduces the levels of SUMOylation. USP36 interacts with SUMO2 and Ubc9 and directly mediates SUMOylation in cells and in vitro. We show that USP36 promotes the SUMOylation of the small nucleolar ribonucleoprotein (snoRNP) components Nop58 and Nhp2 in cells and in vitro and their binding to snoRNAs. It also promotes the SUMOylation of snoRNP components Nop56 and DKC1. Functionally, we show that knockdown of USP36 markedly impairs rRNA processing and translation. Thus, USP36 promotes snoRNP group SUMOylation and is critical for ribosome biogenesis and protein translation.

Indexed as

Ribonucleoproteins, Small NucleolarSumoylationCell Cycle ProteinsDeubiquitinating EnzymesHeLa CellsHumansNuclear ProteinsProteomicsRibosomesUbiquitin ThiolesteraseCell Cycle ProteinsDeubiquitinating EnzymesDKC1 protein, humanNOP56 protein, humanNuclear ProteinsRibonucleoproteins, Small NucleolarUbiquitin ThiolesteraseUSP36 protein, humandeubiquitinating enzymeribosome biogenesissnoRNPSUMOylationUSP36

Identifiers

PMID33852194
PMCPMC8183414
OpenAlexW3155721370

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.