Evidence map›Paper›PMID 33850260›Full record

ArticleCommunications biology2021

Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival.

Megumi Nishinaga, Hiroshi Sugimoto, Yudai Nishitani, Seina Nagai, Satoru Nagatoishi, Norifumi Muraki, Takehiko Tosha, Kouhei Tsumoto, Shigetoshi Aono, Yoshitsugu Shiro and 1 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Recent advances in microbial synthesis of free heme.Applied microbiology and biotechnology · 2024
    Review
  5. Article
  6. Review
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Megumi NishinagaGraduate School of Life Science, University of Hyogo, Ako, Hyogo, Japan.
Hiroshi SugimotoGraduate School of Life Science, University of Hyogo, Ako, Hyogo, Japan.ORCID http://orcid.org/0000-0002-3140-8362
Yudai NishitaniGraduate School of Life Science, University of Hyogo, Ako, Hyogo, Japan.ORCID http://orcid.org/0000-0002-0818-1999
Seina NagaiGraduate School of Life Science, University of Hyogo, Ako, Hyogo, Japan.
Satoru NagatoishiThe Institute of Medical Science, The University of Tokyo, Minato-ku, Tokyo, Japan.ORCID http://orcid.org/0000-0002-0794-3963
Norifumi MurakiInstitute of Molecular Science, National Institute of Natural Sciences, Okazaki, Aichi, Japan.
Takehiko ToshaGraduate School of Life Science, University of Hyogo, Ako, Hyogo, Japan.ORCID http://orcid.org/0000-0002-8971-0759
Kouhei TsumotoThe Institute of Medical Science, The University of Tokyo, Minato-ku, Tokyo, Japan.
Shigetoshi AonoInstitute of Molecular Science, National Institute of Natural Sciences, Okazaki, Aichi, Japan.ORCID http://orcid.org/0000-0002-2870-3694
Yoshitsugu ShiroGraduate School of Life Science, University of Hyogo, Ako, Hyogo, Japan. yshiro@sci.u-hyogo.ac.jp.ORCID http://orcid.org/0000-0003-0695-8327
Hitomi SawaiGraduate School of Life Science, University of Hyogo, Ako, Hyogo, Japan. sawai@sci.u-hyogo.ac.jp.ORCID http://orcid.org/0000-0002-0714-8337
University of Hyogo · JPNational Institutes of Natural Sciences · JPThe University of Tokyo · JPTokyo University of Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hemes (iron-porphyrins) are critical for biological processes in all organisms. Hemolytic bacteria survive by acquiring b-type heme from hemoglobin in red blood cells from their animal hosts. These bacteria avoid the cytotoxicity of excess heme during hemolysis by expressing heme-responsive sensor proteins that act as transcriptional factors to regulate the heme efflux system in response to the cellular heme concentration. Here, the underlying regulatory mechanisms were investigated using crystallographic, spectroscopic, and biochemical studies to understand the structural basis of the heme-responsive sensor protein PefR from Streptococcus agalactiae, a causative agent of neonatal life-threatening infections. Structural comparison of heme-free PefR, its complex with a target DNA, and heme-bound PefR revealed that unique heme coordination controls a >20 Å structural rearrangement of the DNA binding domains to dissociate PefR from the target DNA. We also found heme-bound PefR stably binds exogenous ligands, including carbon monoxide, a by-product of the heme degradation reaction.

Indexed as

HemolysisBacterial ProteinsHemeStreptococcus agalactiaeBacterial ProteinsHeme

Identifiers

PMID33850260
PMCPMC8044140
OpenAlexW3152743673

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.