Evidence map›Paper›PMID 33850151›Full record

ArticleNature communications2021

Computationally-guided exchange of substrate selectivity motifs in a modular polyketide synthase acyltransferase.

Edward Kalkreuter, Kyle S Bingham, Aaron M Keeler, Andrew N Lowell, Jennifer J Schmidt, David H Sherman, Gavin J Williams

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Promiscuity-Guided Enzyme Evolution via Substrate Multiplexed Screening.Angewandte Chemie (International ed. in English) · 2026
    Review
  3. Article
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  6. Review
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  11. Article
  12. Article
  13. Article
  14. Review
  15. Current State-of-the-Art Toward Chemoenzymatic Synthesis of Polyketide Natural Products.Chembiochem : a European journal of chemical biology · 2023
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Edward KalkreuterDepartment of Chemistry, NC State University, Raleigh, NC, USA.ORCID 0000-0002-8241-4455
Kyle S BinghamDepartment of Chemistry, NC State University, Raleigh, NC, USA.
Aaron M KeelerDepartment of Chemistry, NC State University, Raleigh, NC, USA.
Andrew N LowellLife Sciences Institute, Department of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.
Jennifer J SchmidtLife Sciences Institute, Department of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.
David H ShermanLife Sciences Institute, Department of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0001-8334-3647
Gavin J WilliamsDepartment of Chemistry, NC State University, Raleigh, NC, USA. gjwillia@ncsu.edu.ORCID 0000-0003-2172-9063

Funding

Discovery and Characterization of Natural Product Systems-Research Supplement to Promote DiversityR35GM118101 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHERMAN, DAVID H · 2016 to 2025
$3.3M
Synthetic Biology Approach to Regioselectively Modified PolyketidesR01GM104258 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI WILLIAMS, GAVIN J · 2013 to 2017
$1.4M
NIGMS NIH HHS R01 GM104258NIGMS NIH HHS R35 GM118101
6 · The paper itself

Abstract

Polyketides, one of the largest classes of natural products, are often clinically relevant. The ability to engineer polyketide biosynthesis to produce analogs is critically important. Acyltransferases (ATs) of modular polyketide synthases (PKSs) catalyze the installation of malonyl-CoA extenders into polyketide scaffolds. ATs have been targeted extensively to site-selectively introduce various extenders into polyketides. Yet, a complete inventory of AT residues responsible for substrate selection has not been established, limiting the scope of AT engineering. Here, molecular dynamics simulations are used to prioritize ~50 mutations within the active site of EryAT6 from erythromycin biosynthesis, leading to identification of two previously unexplored structural motifs. Exchanging both motifs with those from ATs with alternative extender specificities provides chimeric PKS modules with expanded and inverted substrate specificity. Our enhanced understanding of AT substrate selectivity and application of this motif-swapping strategy are expected to advance our ability to engineer PKSs towards designer polyketides.

Indexed as

AcyltransferasesCatalytic DomainMalonyl Coenzyme AMolecular Dynamics SimulationMutagenesisPolyketidesPolyketide SynthasesProtein EngineeringSecondary MetabolismSubstrate SpecificityAcyltransferasesMalonyl Coenzyme APolyketidesPolyketide Synthases

Identifiers

PMID33850151
PMCPMC8044089

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.