Evidence map›Paper›PMID 33850023›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

A model for a partnership of lipid transfer proteins and scramblases in membrane expansion and organelle biogenesis.

Alireza Ghanbarpour, Diana P Valverde, Thomas J Melia, Karin M Reinisch

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 155 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
155citing papers in PubMed, 1 pooled it
27.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

155 citing papers in PubMed, 1 synthesis or guideline pooled it, 251 citations in OpenAlex.

  1. Stay in touch with the endoplasmic reticulum.Science China. Life sciences · 2024
    Pooled it
  2. Review
  3. Article
  4. Article
  5. bioRxiv : the preprint server for biology · 2026
    Article
  6. Review
  7. VMP1 forms a CaScience advances · 2026
    Article
  8. The Human Autophagy Core Complexes.Annual review of biochemistry · 2026
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. The molecular mechanism of lipid uptake by membrane-anchored bridge-like lipid transfer proteins.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. ATG2 is a triglyceride transfer protein.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article

95 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Alireza GhanbarpourDepartment of Cell Biology, Yale University School of Medicine, New Haven, CT 06520.ORCID 0000-0002-7485-029X
Diana P ValverdeDepartment of Cell Biology, Yale University School of Medicine, New Haven, CT 06520.ORCID 0000-0002-6224-230X
Thomas J MeliaDepartment of Cell Biology, Yale University School of Medicine, New Haven, CT 06520 thomas.melia@yale.edu Karin.Reinisch@Yale.edu.ORCID 0000-0002-5798-4624
Karin M ReinischDepartment of Cell Biology, Yale University School of Medicine, New Haven, CT 06520 thomas.melia@yale.edu Karin.Reinisch@Yale.edu.ORCID 0000-0001-9140-6150
Yale University · US

Funding

Skill Development for Diverse Scientific Careers: A New Course Predoctoral Program in Cellular and Molecular BiologyT32GM007223 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 1985 to 2019
$31.0M
Molecular Basis for Membrane Lipid HomeostasisR35GM131715 · NIGMS · YALE UNIVERSITY · PI KARIN M REINISCH · 2019 to 2026
$6.5M
Autophagy and NeurodegenerationR01NS063973 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MELIA, THOMAS JAMES, YAMAMOTO, AI · 2008 to 2019
$3.8M
Lipid flux during autophagosome membrane biogenesisR01GM135290 · NIGMS · YALE UNIVERSITY · PI MELIA, THOMAS JAMES · 2020 to 2023
$1.3M
The Role of Lipid Transport in Autophagy Biogenesis Using Structural and Biochemical ApproachesF32GM137568 · NIGMS · YALE UNIVERSITY · PI GHANBARPOUR, ALIREZA · 2020 to 2021
$85k
NIGMS NIH HHS F32 GM137568NIGMS NIH HHS R01 GM135290NIGMS NIH HHS R35 GM131715NIGMS NIH HHS T32 GM007223NINDS NIH HHS R01 NS063973
6 · The paper itself

Abstract

The autophagy protein ATG2, proposed to transfer bulk lipid from the endoplasmic reticulum (ER) during autophagosome biogenesis, interacts with ER residents TMEM41B and VMP1 and with ATG9, in Golgi-derived vesicles that initiate autophagosome formation. In vitro assays reveal TMEM41B, VMP1, and ATG9 as scramblases. We propose a model wherein membrane expansion results from the partnership of a lipid transfer protein, moving lipids between the cytosolic leaflets of apposed organelles, and scramblases that reequilibrate the leaflets of donor and acceptor organelle membranes as lipids are depleted or augmented. TMEM41B and VMP1 are implicated broadly in lipid homeostasis and membrane dynamics processes in which their scrambling activities likely are key.

Indexed as

AutophagosomesAutophagyAutophagy-Related ProteinsCarrier ProteinsEndoplasmic ReticulumHumansLipid MetabolismLipidsMembrane ProteinsMembranesModels, BiologicalModels, TheoreticalOrganelle BiogenesisPhospholipid Transfer ProteinsATG2A protein, humanAutophagy-Related ProteinsCarrier ProteinsLipidslipid transfer proteinMembrane ProteinsPhospholipid Transfer ProteinsTMEM41B protein, humanVMP1 protein, humanATG9AscramblaseTMEM41BVMP1

Identifiers

PMID33850023
PMCPMC8072408
OpenAlexW3154074861

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.