Evidence map›Paper›PMID 33849432›Full record

ArticleBMC immunology2021

Predicting the allergenicity of legume proteins using a PBMC gene expression assay.

Mark Smits, Marjolein Meijerink, Thuy-My Le, André Knulst, Aard de Jong, Martinus Petrus Maria Caspers, Everton Souto Lima, Lilia Babé, Gregory Ladics, Scott McClain and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. An advancedFrontiers in immunology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Mark Smits *Netherlands Organisation for Applied Scientific Research (TNO), Utrecht, The Netherlands.
Marjolein Meijerink *Netherlands Organisation for Applied Scientific Research (TNO), Utrecht, The Netherlands. marjolein.meijerink@tno.nl.
Thuy-My LeDepartment of Dermatology and Allergology, University Medical Center Utrecht, Utrecht, The Netherlands.
André KnulstDepartment of Dermatology and Allergology, University Medical Center Utrecht, Utrecht, The Netherlands.
Aard de JongNetherlands Organisation for Applied Scientific Research (TNO), Utrecht, The Netherlands.
Martinus Petrus Maria CaspersNetherlands Organisation for Applied Scientific Research (TNO), Utrecht, The Netherlands.
Everton Souto LimaNetherlands Organisation for Applied Scientific Research (TNO), Utrecht, The Netherlands.
Lilia BabéDuPont Nutrition and Biosciences, Palo Alto, CA, USA.
Gregory LadicsDuPont Nutrition and Biosciences, Wilmington, DE, USA.
Scott McClainFormerly, Syngenta Crop Protection, LLC, 754 Research Triangle Park, Durham, USA.
Geert HoubenNetherlands Organisation for Applied Scientific Research (TNO), Utrecht, The Netherlands.
Kitty VerhoeckxNetherlands Organisation for Applied Scientific Research (TNO), Utrecht, The Netherlands.
Netherlands Organisation for Applied Scientific Research · NLDuPont (United States) · USUniversity Medical Center Utrecht · NLTriangle · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFood proteins differ in their allergenic potential. Currently, there is no predictive and validated bio-assay to evaluate the allergenicity of novel food proteins. The objective of this study was to investigate the potential of a human peripheral blood mononuclear cell (PBMC) gene expression assay to identify biomarkers to predict the allergenicity of legume proteins.

resultsPBMCs from healthy donors were exposed to weakly and strongly allergenic legume proteins (2S albumins, and 7S and 11S globulins from white bean, soybean, peanut, pea and lupine) in three experiments. Possible biomarkers for allergenicity were investigated by exposing PBMCs to a protein pair of weakly (white bean) and strongly allergenic (soybean) 7S globulins in a pilot experiment. Gene expression was measured by RNA-sequencing and differentially expressed genes were selected as biomarkers. 153 genes were identified as having significantly different expression levels to the 7S globulin of white bean compared to soybean. Inclusion of multiple protein pairs from 2S albumins (lupine and peanut) and 7S globulins (white bean and soybean) in a larger study, led to the selection of CCL2, CCL7, and RASD2 as biomarkers to distinguish weakly from strongly allergenic proteins. The relevance of these three biomarkers was confirmed by qPCR when PBMCs were exposed to a larger panel of weakly and strongly allergenic legume proteins (2S albumins, and 7S and 11S globulins from white bean, soybean, peanut, pea and lupine).

conclusionsThe PBMC gene expression assay can potentially distinguish weakly from strongly allergenic legume proteins within a protein family, though it will be challenging to develop a generic method for all protein families from plant and animal sources. Graded responses within a protein family might be of more value in allergenicity prediction instead of a yes or no classification.

Indexed as

2S Albumins, PlantAllergensAntigens, PlantBiomarkersCells, CulturedChemokine CCL2Chemokine CCL7FabaceaeFood HypersensitivityGlobulinsGTP-Binding ProteinsHumansImmunoglobulin ELeukocytes, MononuclearSeed Storage ProteinsSequence Analysis, RNA2S Albumins, PlantAllergensAntigens, Plantbeta-conglycinin protein, Glycine maxBiomarkersChemokine CCL2Chemokine CCL7GlobulinsGTP-Binding ProteinsImmunoglobulin ERASD2 protein, humanSeed Storage ProteinsSoybean ProteinsAllergenicity prediction assayAllergenic legume protein pairsBiomarker discoveryFood allergyGraded allergenic response

Identifiers

PMID33849432
PMCPMC8042678
OpenAlexW3155801372

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.