Evidence map›Paper›PMID 33847899›Full record

ArticleGenes & genomics2021

Differential proteome profile of gill and spleen in three pathogen-infected Paralichthys olivaceus.

A-Reum Lee, Hyunsu Kim, Kyung-Yoon Jeon, Eun-Ji Ko, Ahran Kim, Nameun Kim, HyeongJin Roh, Yoonhang Lee, Jiyeon Park, Do-Hyung Kim and 5 more

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Article in Genes & genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 55% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 1 country.

A-Reum LeeDepartment of Parasitology and Genetics, Institute for Medical Science, Kosin University College of Medicine, Busan, Republic of Korea.
Hyunsu KimDepartment of Parasitology and Genetics, Institute for Medical Science, Kosin University College of Medicine, Busan, Republic of Korea.
Kyung-Yoon JeonDepartment of Parasitology and Genetics, Institute for Medical Science, Kosin University College of Medicine, Busan, Republic of Korea.
Eun-Ji KoDepartment of Parasitology and Genetics, Institute for Medical Science, Kosin University College of Medicine, Busan, Republic of Korea.
Ahran KimPathology Research Division, National Institute of Fisheries Science, Busan, Republic of Korea.
Nameun KimDepartment of Aquatic Life Medicine, College of Fisheries Science, Pukyong National University, 34, Amnam-dong, Seo-gu, Busan, 602-703, Republic of Korea.
HyeongJin RohDepartment of Aquatic Life Medicine, College of Fisheries Science, Pukyong National University, 34, Amnam-dong, Seo-gu, Busan, 602-703, Republic of Korea.
Yoonhang LeeDepartment of Aquatic Life Medicine, College of Fisheries Science, Pukyong National University, 34, Amnam-dong, Seo-gu, Busan, 602-703, Republic of Korea.
Jiyeon ParkDepartment of Aquatic Life Medicine, College of Fisheries Science, Pukyong National University, 34, Amnam-dong, Seo-gu, Busan, 602-703, Republic of Korea.
Do-Hyung KimDepartment of Aquatic Life Medicine, College of Fisheries Science, Pukyong National University, 34, Amnam-dong, Seo-gu, Busan, 602-703, Republic of Korea.
Yung Hyun ChoiDepartment of Biochemistry, College of Oriental Medicine, Dongeui University, Busan, Republic of Korea.
Suhkmann KimDepartment of Chemistry, College of Natural Sciences, Pusan National University, Busan, Republic of Korea.
Heui-Soo KimDepartment of Biological Sciences, College of Natural Sciences, Pusan National University, Busan, Republic of Korea.
Mee Sun OckDepartment of Parasitology and Genetics, Institute for Medical Science, Kosin University College of Medicine, Busan, Republic of Korea.
Hee-Jae ChaDepartment of Parasitology and Genetics, Institute for Medical Science, Kosin University College of Medicine, Busan, Republic of Korea. hcha@kosin.ac.kr.ORCID 0000-0002-6963-2685
Kosin University · KRPukyong National University · KRPusan National University · KRDong-Eui University · KRNational Institute of Fisheries Science · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOlive flounder (Paralichthys olivaceus) is one of the major cultured fish species in Asia including Korea. However, the mass mortality of olive flounder caused by various pathogens leads to huge economic loss. The pathogens that lead to fish mortality include parasites, bacteria, and viruses that can cause various kinds of diseases.

objectiveThe purpose of this study was to investigate the protein expression patterns in the gills and spleens of olive flounder after artificial infection. We hypothesized that proteomics levels in gills and spleen may be differentially expressed depending on infectious agents.

methodsTo investigate the expression pattern of proteins in gills and spleens, olive flounders were experimentally infected with VHSV (virus), S. parauberis (bacteria), or M. avidus (pathogenic ciliate). Proteins were extracted from the gills and spleens of infected olive flounder. We used 2-DE analysis with LC-MS/MS to investigate proteome changes in infected olive flounders.

resultsThe results of the LC-MS/MS analyses showed different protein expression profiles depending on pathogenic sources and target organs. Proteins related to cytoskeletal structure like keratin, calmodulin and actin were mostly expressed in the infected gills. Proteins involved in the metabolism pathway like glycolysis were expressed mainly in the spleens. The protein profiles of S. parauberis and VHSV infection groups had many similarities, but the profile of the M. avidus infection group was greatly different in the gill and spleen.

conclusionOur results indicate that measures according to the characteristics of each pathogen are necessary for disease prevention and treatment of farmed fish.

Indexed as

ProteomeAnimalsChromatography, LiquidFish DiseasesFlounderGillsNovirhabdovirusOligohymenophoreaSpleenStreptococcusTandem Mass SpectrometryProteomeMiamiensis avidusOlive flounderParalichthys olivaceusProteomicsStreptococcus parauberisVHSV

Identifiers

PMID33847899
OpenAlexW3155657769

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.