Evidence map›Paper›PMID 33846564›Full record

ArticleThe ISME journal2021

Nutrient supplementation experiments with saltern microbial communities implicate utilization of DNA as a source of phosphorus.

Zhengshuang Hua, Matthew Ouellette, Andrea M Makkay, R Thane Papke, Olga Zhaxybayeva

Open access · hybridAbstract read
In one paragraph

Article in The ISME journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Zhengshuang HuaDepartment of Biological Sciences, Dartmouth College, Hanover, NH, USA.
Matthew OuelletteDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.ORCID http://orcid.org/0000-0002-7989-4558
Andrea M MakkayDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA.ORCID http://orcid.org/0000-0002-8154-1364
R Thane PapkeDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, CT, USA. thane@uconn.edu.ORCID http://orcid.org/0000-0003-1371-2341
Olga ZhaxybayevaDepartment of Biological Sciences, Dartmouth College, Hanover, NH, USA. olga.zhaxybayeva@dartmouth.edu.ORCID http://orcid.org/0000-0002-1809-3909
Dartmouth College · USUniversity of Connecticut · USHarvard University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

All environments including hypersaline ones harbor measurable concentrations of dissolved extracellular DNA (eDNA) that can be utilized by microbes as a nutrient. However, it remains poorly understood which eDNA components are used, and who in a community utilizes it. For this study, we incubated a saltern microbial community with combinations of carbon, nitrogen, phosphorus, and DNA, and tracked the community response in each microcosm treatment via 16S rRNA and rpoB gene sequencing. We show that microbial communities used DNA only as a phosphorus source, and provision of other sources of carbon and nitrogen was needed to exhibit a substantial growth. The taxonomic composition of eDNA in the water column changed with the availability of inorganic phosphorus or supplied DNA, hinting at preferential uptake of eDNA from specific organismal sources. Especially favored for growth was eDNA from the most abundant taxa, suggesting some haloarchaea prefer eDNA from closely related taxa. The preferential eDNA consumption and differential growth under various nutrient availability regimes were associated with substantial shifts in the taxonomic composition and diversity of microcosm communities. Therefore, we conjecture that in salterns the microbial community assembly is driven by the available resources, including eDNA.

Indexed as

MicrobiotaPhosphorusDietary SupplementsDNANutrientsRNA, Ribosomal, 16SDNANutrientsPhosphorusRNA, Ribosomal, 16S

Identifiers

PMID33846564
PMCPMC8443641
OpenAlexW3155144384

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.