Evidence map›Paper›PMID 33846343›Full record

ArticleNature communications2021

Activation mechanism of a small prototypic Rec-GGDEF diguanylate cyclase.

Raphael D Teixeira, Fabian Holzschuh, Tilman Schirmer

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. ESM-scan-A tool to guide amino acid substitutions.Protein science : a publication of the Protein Society · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Characterisation of sequence-structure-function space in sensor-effector integrators of phytochrome-regulated diguanylate cyclases.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
  9. Article
  10. Article
  11. Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Raphael D TeixeiraStructural Biology, Biozentrum, University of Basel, Basel, Switzerland.ORCID 0000-0001-9642-7508
Fabian HolzschuhStructural Biology, Biozentrum, University of Basel, Basel, Switzerland.
Tilman SchirmerStructural Biology, Biozentrum, University of Basel, Basel, Switzerland. tilman.schirmer@unibas.ch.ORCID 0000-0001-9512-8346
University of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Diguanylate cyclases synthesising the bacterial second messenger c-di-GMP are found to be regulated by a variety of sensory input domains that control the activity of their catalytical GGDEF domain, but how activation proceeds mechanistically is, apart from a few examples, still largely unknown. As part of two-component systems, they are activated by cognate histidine kinases that phosphorylate their Rec input domains. DgcR from Leptospira biflexa is a constitutively dimeric prototype of this class of diguanylate cyclases. Full-length crystal structures reveal that BeF

Indexed as

Allosteric RegulationAmino Acid SequenceAspartic AcidBerylliumEnzyme ActivationEscherichia coli ProteinsFeedback, PhysiologicalFluoridesKineticsLeptospiraModels, MolecularPhosphorus-Oxygen LyasesPhosphorylationProtein DomainsProtein MultimerizationProtein Structure, SecondaryAspartic AcidBerylliumberyllium fluoridediguanylate cyclaseEscherichia coli ProteinsFluoridesPhosphorus-Oxygen LyasesProtein Subunits

Identifiers

PMID33846343
PMCPMC8041772
OpenAlexW3154533177

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.