Evidence map›Paper›PMID 33846324›Full record

ArticleNature communications2021

Extracellular cap domain is an essential component of the TRPV1 gating mechanism.

Kirill D Nadezhdin, Arthur Neuberger, Yury A Nikolaev, Lyle A Murphy, Elena O Gracheva, Sviatoslav N Bagriantsev, Alexander I Sobolevsky

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
7.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 84 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. TRPV1 antagonism occurs through diverse structural mechanisms.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Journal of Zhejiang University. Science. B · 2026
    Review
  7. Article
  8. Article
  9. Article
  10. Structural insights into TRPV2 modulation by probenecid.Nature structural & molecular biology · 2025
    Article
  11. Single-crystal structure of the spicy capsaicin.Acta crystallographica. Section C, Structural chemistry · 2025
    Article
  12. Article
  13. Forty sites of TRP channel regulation.Current opinion in chemical biology · 2025
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Kirill D Nadezhdin *Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA.
Arthur Neuberger *Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA.
Yury A NikolaevDepartment of Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, CT, USA.
Lyle A MurphyDepartment of Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, CT, USA.
Elena O GrachevaDepartment of Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, CT, USA.
Sviatoslav N BagriantsevDepartment of Cellular and Molecular Physiology, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-6661-3403
Alexander I SobolevskyDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA. as4005@cumc.columbia.edu.ORCID http://orcid.org/0000-0001-5181-8644
Yale University · USColumbia University · USColumbia University Irving Medical Center · US

Funding

NCCAT: National Center for CryoEM Access and Training- Supplement for Windows 10 and FFIU24GM129539 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2018 to 2023
$53.9M
Structure and Function of AMPA subtype ionotropic glutamate receptorsR01NS083660 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KURNIKOVA, MARIA G, SOBOLEVSKY, ALEXANDER · 2013 to 2022
$4.3M
Role of Piezo2 and Nav channels in rapidly-adapting neuronal mechanoreceptorsR01NS097547 · NINDS · YALE UNIVERSITY · PI Sviatoslav Bagriantsev · 2017 to 2026
$4.1M
Structure and function of Transient Receptor Potential ChannelsR01CA206573 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Alexander Sobolevsky · 2017 to 2026
$3.8M
Single-Particle Cryo-EM Characterization of AMPA Receptor Functional StatesR01NS107253 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Alexander Sobolevsky · 2018 to 2026
$3.5M
Structural and functional principles of activation and regulation of the transient receptor potential channel TRPV3.R01AR078814 · NIAMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Alexander Sobolevsky · 2022 to 2026
$2.8M
The role of TRPM8 and Nav1.8 channels in cold tolerance of hibernatorsR01NS091300 · NINDS · YALE UNIVERSITY · PI GRACHEVA, ELENA · 2015 to 2020
$2.4M
Structure and Function of Ionotropic Glutamate ReceptorsR37NS083660 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Alexander Sobolevsky · 2024 to 2026
$1.7M
NCI NIH HHS R01 CA206573NIAMS NIH HHS R01 AR078814NIGMS NIH HHS U24 GM129539NINDS NIH HHS R01 NS083660NINDS NIH HHS R01 NS091300NINDS NIH HHS R01 NS097547NINDS NIH HHS R01 NS107253NINDS NIH HHS R37 NS083660
6 · The paper itself

Abstract

Transient receptor potential (TRP) channels are polymodal molecular sensors involved in numerous physiological processes and implicated in a variety of human diseases. Several structures of the founding member of the TRP channel family, TRPV1, are available, all of which were determined for the protein missing the N- and C-termini and the extracellular S5-P-loop. Here, we present structures of the full-length thirteen-lined ground squirrel TRPV1 solved by cryo-EM. Our structures resolve the extracellular cap domain formed by the S5-P-loops and the C-terminus that wraps around the three-stranded β-sheet connecting elements of the TRPV1 intracellular skirt. The cap domain forms a dome above the pore's extracellular entrance, with four portals leading to the ion conductance pathway. Deletion of the cap increases the TRPV1 average conductance, reduces the open probability and affects ion selectivity. Our data show that both the termini and the cap domain are critical determinants of TRPV1 function.

Indexed as

Ion Channel GatingAnimalsExtracellular SpaceHEK293 CellsHumansLigandsLipidsProtein DomainsProtein Structure, SecondaryProtein SubunitsSciuridaeTRPV Cation ChannelsLigandsLipidsProtein SubunitsTRPV Cation Channels

Identifiers

PMID33846324
PMCPMC8041747
OpenAlexW3156271189

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.