ArticleNature communications2021
Go Get Data (GGD) is a framework that facilitates reproducible access to genomic data.
Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
10 citing papers in PubMed.
- Segzoo: a turnkey system that summarizes genome annotations.Bioinformatics (Oxford, England) · 2026Article
- Transcriptome-wide outlier approach identifies individuals with minor spliceopathies.American journal of human genetics · 2025Article
- ReUseData: an R/Bioconductor tool for reusable and reproducible genomic data management.BMC bioinformatics · 2024Article
- SciDataFlow: a tool for improving the flow of data through science.Bioinformatics (Oxford, England) · 2024Article
- genomepy: genes and genomes at your fingertips.Bioinformatics (Oxford, England) · 2023Article
- Combining genetic constraint with predictions of alternative splicing to prioritize deleterious splicing in rare disease studies.BMC bioinformatics · 2022Article
- The role of metadata in reproducible computational research.Patterns (New York, N.Y.) · 2021Review
- Identity and compatibility of reference genome resources.NAR genomics and bioinformatics · 2021Article
- Go Get Data (GGD) is a framework that facilitates reproducible access to genomic data.Nature communications · 2021Article
- De novo structural mutation rates and gamete-of-origin biases revealed through genome sequencing of 2,396 families.American journal of human genetics · 2021Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
The rapid increase in the amount of genomic data provides researchers with an opportunity to integrate diverse datasets and annotations when addressing a wide range of biological questions. However, genomic datasets are deposited on different platforms and are stored in numerous formats from multiple genome builds, which complicates the task of collecting, annotating, transforming, and integrating data as needed. Here, we developed Go Get Data (GGD) as a fast, reproducible approach to installing standardized data recipes. GGD is available on Github ( https://gogetdata.github.io/ ), is extendable to other data types, and can streamline the complexities typically associated with data integration, saving researchers time and improving research reproducibility.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.