Evidence map›Paper›PMID 33846253›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Dnmt3a deficiency in the skin causes focal, canonical DNA hypomethylation and a cellular proliferation phenotype.

David Y Chen, Ian M Ferguson, Krista A Braun, Leslie A Sutton, Nichole M Helton, Sai Mukund Ramakrishnan, Amanda M Smith, Christopher A Miller, Timothy J Ley

Open access · hybridAbstract readCase Reports
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Review
  3. Melanoma in a patient with DNMT3A overgrowth syndrome.Cold Spring Harbor molecular case studies · 2023
    Article
  4. Article
  5. A Hairy Cituation - PADIs in Regeneration and Alopecia.Frontiers in cell and developmental biology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

David Y ChenDivision of Dermatology, Department of Medicine, Washington University School of Medicine, Saint Louis, MO 63110.ORCID 0000-0002-3681-6576
Ian M FergusonDivision of Dermatology, Department of Medicine, Washington University School of Medicine, Saint Louis, MO 63110.ORCID 0000-0001-5570-2016
Krista A BraunDivision of Dermatology, Department of Medicine, Washington University School of Medicine, Saint Louis, MO 63110.ORCID 0000-0002-7516-366X
Leslie A SuttonDivision of Dermatology, Department of Medicine, Washington University School of Medicine, Saint Louis, MO 63110.ORCID 0000-0002-6812-0880
Nichole M HeltonSection of Stem Cell Biology, Division of Oncology, Department of Medicine, Washington University School of Medicine, Saint Louis, MO 63110.ORCID 0000-0001-8308-9407
Sai Mukund RamakrishnanSection of Stem Cell Biology, Division of Oncology, Department of Medicine, Washington University School of Medicine, Saint Louis, MO 63110.
Amanda M SmithSection of Stem Cell Biology, Division of Oncology, Department of Medicine, Washington University School of Medicine, Saint Louis, MO 63110.ORCID 0000-0002-8716-6745
Christopher A MillerSection of Stem Cell Biology, Division of Oncology, Department of Medicine, Washington University School of Medicine, Saint Louis, MO 63110.
Timothy J LeySection of Stem Cell Biology, Division of Oncology, Department of Medicine, Washington University School of Medicine, Saint Louis, MO 63110 timley@wustl.edu.ORCID 0000-0002-9913-0520
Washington University in St. Louis · US

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI TIMOTHY J. EBERLEIN · 2001 to 2026
$128.0M
Molecular Pathogenesis of Acute Myeloid LeukemiaR35CA197561 · NCI · WASHINGTON UNIVERSITY · PI Timothy J. Ley · 2015 to 2026
$11.0M
COMPREHENSIVE INFORMATIC ANALYSES OF AML GENOMES AND EPIGENOMESR50CA211782 · NCI · WASHINGTON UNIVERSITY · PI Christopher A Miller · 2017 to 2026
$1.5M
Epigenetic Regulation of Cutaneous TumorigenesisK08CA237727 · NCI · WASHINGTON UNIVERSITY · PI CHEN, DAVID · 2020 to 2024
$1.2M
NCI NIH HHS K08 CA237727NCI NIH HHS P30 CA091842NCI NIH HHS R35 CA197561NCI NIH HHS R50 CA211782
6 · The paper itself

Abstract

DNA hypomethylation is a feature of epidermal cells from aged and sun-exposed skin, but the mechanisms responsible for this methylation loss are not known. Dnmt3a is the dominant de novo DNA methyltransferase in the skin; while epidermal Dnmt3a deficiency creates a premalignant state in which keratinocytes are more easily transformed by topical mutagens, the conditions responsible for this increased susceptibility to transformation are not well understood. Using whole genome bisulfite sequencing, we identified a focal, canonical DNA hypomethylation phenotype in the epidermal cells of Dnmt3a-deficient mice. Single-cell transcriptomic analysis revealed an increased proportion of cells with a proliferative gene expression signature, while other populations in the skin were relatively unchanged. Although total DNMT3A deficiency has not been described in human disease states, rare patients with an overgrowth syndrome associated with behavioral abnormalities and an increased risk of cancer often have heterozygous, germline mutations in

Indexed as

Abnormalities, MultipleAdolescentAnimalsChildDNADNA (Cytosine-5-)-MethyltransferasesDNA MethylationDNA Methyltransferase 3ADNA Modification MethylasesGerm-Line MutationHeterozygoteHumansIntellectual DisabilityKeratinocytesMaleMethyltransferasesDNADNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3ADNA Modification MethylasesDnmt3a protein, mouseMethyltransferasesDNA methylationDNMT3Aepidermisepigeneticpremalignant

Identifiers

PMID33846253
PMCPMC8072215
OpenAlexW3155446401

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.