Evidence map›Paper›PMID 33843587›Full record

ArticleeLife2021

Molecular tracking devices quantify antigen distribution and archiving in the murine lymph node.

Shannon M Walsh, Ryan M Sheridan, Erin D Lucas, Thu A Doan, Brian C Ware, Johnathon Schafer, Rui Fu, Matthew A Burchill, Jay R Hesselberth, Beth Ann Jiron Tamburini

Open access · goldAbstract read
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 29 citations in OpenAlex.

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  18. MARCOThe EMBO journal · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Shannon M Walsh *Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, United States.ORCID 0000-0001-9845-629X
Ryan M Sheridan *RNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, United States.
Erin D Lucas *Immunology Graduate Program, University of Colorado School of Medicine, Aurora, United States.
Thu A DoanImmunology Graduate Program, University of Colorado School of Medicine, Aurora, United States.
Brian C WareImmunology Graduate Program, University of Colorado School of Medicine, Aurora, United States.
Johnathon SchaferDepartment of Medicine, Division of Gastroenterology and Hepatology, University of Colorado School of Medicine, Aurora, United States.
Rui FuRNA Bioscience Initiative, University of Colorado School of Medicine, Aurora, United States.
Matthew A BurchillDepartment of Medicine, Division of Gastroenterology and Hepatology, University of Colorado School of Medicine, Aurora, United States.
Jay R HesselberthDepartment of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, United States.ORCID 0000-0002-6299-179X
Beth Ann Jiron TamburiniImmunology Graduate Program, University of Colorado School of Medicine, Aurora, United States.ORCID 0000-0003-1991-231X
University of Colorado Denver · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
TRAINING PROGRAM IN IMMUNOLOGYT32AI007405 · NIAID · UNIVERSITY OF COLORADO DENVER · PI Laurel L Lenz, Raul Martin Torres · 1991 to 2026
$10.5M
Nanopore analysis of transfer RNA forms and functionsR35GM119550 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI Jay R Hesselberth · 2016 to 2026
$4.5M
Cooperation between lymphatic stroma and hematopoietic cells shapes protective immunityR01AI121209 · NIAID · UNIVERSITY OF COLORADO DENVER · PI Beth Ann Tamburini · 2016 to 2026
$4.5M
Molecular Mechanisms of Immune ToleranceT32AI074491 · NIAID · NATIONAL JEWISH HEALTH · PI CAMBIER, JOHN C, PELANDA, ROBERTA · 2009 to 2023
$4.1M
Predoctoral Training Program in Molecular and Cellular Biology (Supplement: Mentoring in the Research Environment)T32GM136444 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI MICHAEL A MCMURRAY, Rytis Prekeris · 2020 to 2026
$3.7M
Biochemistry at single-cell resolution: a new approach to understand functional heterogeneityR01AG071467 · NIA · UNIVERSITY OF COLORADO DENVER · PI HESSELBERTH, JAY R · 2020 to 2024
$3.2M
PD-L1 reverse signaling in dermal DCs promotes DC migration and skin immunity to cutaneous pathogensR01AI155474 · NIAID · UNIVERSITY OF COLORADO DENVER · PI TAMBURINI, BETH ANN · 2020 to 2024
$2.3M
Oxidized LDL dependent reprogramming of the liver lymphatic endotheliumR01DK125595 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI BURCHILL, MATTHEW A · 2020 to 2023
$1.7M
Molecular tracking of antigen following vaccinationR21AI155929 · NIAID · UNIVERSITY OF COLORADO DENVER · PI TAMBURINI, BETH ANN · 2021 to 2022
$417k
NCI NIH HHS P30 CA046934NIAID NIH HHS R01 AI121209NIAID NIH HHS R01 AI155474NIAID NIH HHS R21 AI155929NIAID NIH HHS T32 AI007405NIAID NIH HHS T32 AI074491NIA NIH HHS R01 AG071467NIDDK NIH HHS R01 DK125595NIGMS NIH HHS R35 GM119550NIGMS NIH HHS T32 GM136444
6 · The paper itself

Abstract

The detection of foreign antigens in vivo has relied on fluorescent conjugation or indirect read-outs such as antigen presentation. In our studies, we found that these widely used techniques had several technical limitations that have precluded a complete picture of antigen trafficking or retention across lymph node cell types. To address these limitations, we developed a 'molecular tracking device' to follow the distribution, acquisition, and retention of antigen in the lymph node. Utilizing an antigen conjugated to a nuclease-resistant DNA tag, acting as a combined antigen-adjuvant conjugate, and single-cell mRNA sequencing, we quantified antigen abundance in the lymph node. Variable antigen levels enabled the identification of caveolar endocytosis as a mechanism of antigen acquisition or retention in lymphatic endothelial cells. Thus, these molecular tracking devices enable new approaches to study dynamic tissue dissemination of antigen-adjuvant conjugates and identify new mechanisms of antigen acquisition and retention at cellular resolution in vivo.

Indexed as

Single-Cell AnalysisAnimalsAntigen PresentationAntigensCaveolaeCells, CulturedDendritic CellsDNAEndocytosisEndothelial CellsLymph NodesMacrophagesMiceMice, Inbred C57BLMice, TransgenicOvalbuminAntigensDNAOVA-8OvalbuminPeptide FragmentsPhosphorothioate OligonucleotidesRNA, Messengerantigen archivingantigen processingcell biologydendritic cellimmunologyinflammationlymphatic endothelial celllymph nodemousesingle-cell mRNA sequencing

Identifiers

PMID33843587
PMCPMC8116055
OpenAlexW3155592432

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.