Evidence map›Paper›PMID 33841414›Full record

ReviewFrontiers in immunology2021

Utilization of Host Cell Chromosome Conformation by Viral Pathogens: Knowing When to Hold and When to Fold.

Kinjal Majumder, Abigail J Morales

Open access · goldAbstract readReview
In one paragraph

Review in Frontiers in immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Applying 3D Genome Technology in Virology Research.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  5. Article
  6. Article
  7. Host Subcellular Organelles: Targets of Viral Manipulation.International journal of molecular sciences · 2024
    Review
  8. Review
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Kinjal MajumderInstitute for Molecular Virology and McArdle Laboratory for Cancer Research, Human Cancer Virology Program, University of Wisconsin Carbone Cancer Center, University of Wisconsin School of Medicine and Public Health, Madison, WI, United States.
Abigail J MoralesDepartment of Medical Laboratory Sciences, Hunter College of the City University of New York, New York, NY, United States.
City University of New York · USUniversity of Wisconsin Carbone Cancer Center · US

Funding

How does a viral pathogen manipulate the DNA Damage Response to promote successful viral infection?K99AI148511 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI MAJUMDER, KINJAL · 2020 to 2021
$207k
Interaction between parvovirus replication and the cellular DNA-damage responseF32AI131468 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI MAJUMDER, KINJAL · 2018 to 2020
$171k
NIAID NIH HHS F32 AI131468NIAID NIH HHS K99 AI148511
6 · The paper itself

Abstract

Though viruses have their own genomes, many depend on the nuclear environment of their hosts for replication and survival. A substantial body of work has therefore been devoted to understanding how viral and eukaryotic genomes interact. Recent advances in chromosome conformation capture technologies have provided unprecedented opportunities to visualize how mammalian genomes are organized and, by extension, how packaging of nuclear DNA impacts cellular processes. Recent studies have indicated that some viruses, upon entry into host cell nuclei, produce factors that alter host chromatin topology, and thus, impact the 3D organization of the host genome. Additionally, a variety of distinct viruses utilize host genome architectural factors to advance various aspects of their life cycles. Indeed, human gammaherpesviruses, known for establishing long-term reservoirs of latent infection in B lymphocytes, utilize 3D principles of genome folding to package their DNA and establish latency in host cells. This manipulation of host epigenetic machinery by latent viral genomes is etiologically linked to the onset of B cell oncogenesis. Small DNA viruses, by contrast, are tethered to distinct cellular sites that support virus expression and replication. Here, we briefly review the recent findings on how viruses and host genomes spatially communicate, and how this impacts virus-induced pathology.

Indexed as

Chromosomes, HumanGenome, ViralVirus IntegrationAnimalsCell Transformation, ViralDNA, ViralEpigenesis, GeneticGammaherpesvirinaeGene Expression Regulation, ViralHerpesviridae InfectionsHost-Pathogen InteractionsHumansNucleic Acid ConformationTumor Virus InfectionsVirus InternalizationVirus LatencyDNA, ViralB cellsCohesinCTCFepigeneticshuman gammaherpesvirusessmall DNA virusestopologically associating domains

Identifiers

PMID33841414
PMCPMC8027251
OpenAlexW3151930613

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.