ArticleFrontiers in microbiology2021
DNA Metabarcoding Reveals Broad Presence of Plant Pathogenic Oomycetes in Soil From Internationally Traded Plants.
Article in Frontiers in microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed, 26 citations in OpenAlex.
- Genetic diversity and evolution of nine avirulence genes in South KoreanFrontiers in microbiology · 2026Article
- A glimpse into Oomycota diversity in freshwater lakes and adjacent forests using a metabarcoding approach.Scientific reports · 2025Article
- Synthetic spike-in metabarcoding for plant pathogen diagnostics results in precise quantification of copy number within the genusISME communications · 2025Article
- Metabolome-driven microbiome assembly determining the health of ginger crop (Zingiber officinale L. Roscoe) against rhizome rot.Microbiome · 2024Article
- Worldwide forest surveys reveal forty-three new species inStudies in mycology · 2024Article
- Long-Term Tillage and Crop Rotation Regimes Reshape Soil-Borne Oomycete Communities in Soybean, Corn, and Wheat Production Systems.Plants (Basel, Switzerland) · 2023Article
- Current and emerging trends in techniques for plant pathogen detection.Frontiers in plant science · 2023Review
- Comparison of Primers for the Detection ofJournal of fungi (Basel, Switzerland) · 2022Article
- New-Generation Sequencing Technology in Diagnosis of Fungal Plant Pathogens: A Dream Comes True?Journal of fungi (Basel, Switzerland) · 2022Review
- Environmental DNA reveals diversity and abundance ofAerobiologia · 2022Article
Corrections and comments
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Authors and funding
5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Plants with roots and soil clumps transported over long distances in plant trading can harbor plant pathogenic oomycetes, facilitating disease outbreaks that threaten ecosystems, biodiversity, and food security. Tools to detect the presence of such oomycetes with a sufficiently high throughput and broad scope are currently not part of international phytosanitary testing regimes. In this work, DNA metabarcoding targeting the internal transcribed spacer (ITS) region was employed to broadly detect and identify oomycetes present in soil from internationally shipped plants. This method was compared to traditional isolation-based detection and identification after an enrichment step. DNA metabarcoding showed widespread presence of potentially plant pathogenic
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