Evidence map›Paper›PMID 33838073›Full record

ArticleFEBS open bio2021

CDX2 regulates interleukin-33 gene expression in intestinal epithelial cells (LS174T).

Sylvester Larsen, Jakob Benedict Seidelin, Johanne Davidsen, Katja Dahlgaard, Claus Henrik Nielsen, Eric Paul Bennett, Ole Birger Pedersen, Mehmet Coskun, Jesper Thorvald Troelsen

Open access · goldAbstract read
In one paragraph

Article in FEBS open bio, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Hepatic pannexin-1 mediates ST2Clinical and translational medicine · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Sylvester LarsenDepartment of Science and Environment, Roskilde University, Denmark.ORCID 0000-0002-5736-8055
Jakob Benedict SeidelinDepartment of Gastroenterology, Medical Section, Herlev Hospital, University of Copenhagen, Herlev, Denmark.
Johanne DavidsenDepartment of Science and Environment, Roskilde University, Denmark.
Katja DahlgaardDepartment of Science and Environment, Roskilde University, Denmark.
Claus Henrik NielsenInstitute for Inflammation Research, Center for Rheumatology and Spine Diseases, Section 7521, Copenhagen University Hospital Rigshospitalet, Denmark.
Eric Paul BennettDepartment of Odontology, Copenhagen Center for Glycomics, Faculty of Health Sciences, University of Copenhagen, Denmark.
Ole Birger PedersenDepartment of Clinical Immunology, Naestved Hospital, Denmark.
Mehmet CoskunDepartment of Gastroenterology, Medical Section, Herlev Hospital, University of Copenhagen, Herlev, Denmark.
Jesper Thorvald TroelsenDepartment of Science and Environment, Roskilde University, Denmark.ORCID 0000-0002-4177-3267
Roskilde University · DKUniversity of Copenhagen · DKCopenhagen University Hospital · DKNæstved Sygehus · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dysregulation of interleukin-33 (IL-33) has been implicated in the pathogenesis of several autoimmune and inflammatory diseases, but few studies have examined transcriptional regulation of the IL33 gene. In the intestines, gene regulation is controlled by a transcription factor network of which the intestinal-specific transcription factor CDX2 is a key component. In this study, we investigated whether CDX2 regulates IL33 mRNA expression. We examined IL33 mRNA expression in primary colonic epithelial cells from healthy humans and epithelial cell lines, revealing high expression levels in primary colonic and LS174T cells. Combining genomics data (ChIP-seq, RNA-seq) and IL33 promoter analyses in LS174T cells revealed intronic enhancer activity in the IL33 gene that is dependent on CDX2 expression. Western blotting and qRT-PCR confirmed that IL33 expression is upregulated in a CDX2 concentration-dependent manner, thereby providing the first evidence that CDX2 regulates the expression of IL33.

Indexed as

CDX2 Transcription FactorEpithelial CellsHumansInterleukin-33IntestinesRNA, MessengerTumor Cells, CulturedCDX2 protein, humanCDX2 Transcription FactorIL33 protein, humanInterleukin-33RNA, MessengerCaudal-related homeobox transcription factor 2gene regulationinflammatory bowel diseaseinterleukin-33intestinal regulationtranscriptional control

Identifiers

PMID33838073
PMCPMC8167865
OpenAlexW3146732886

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.