Evidence map›Paper›PMID 33837672›Full record

ArticleTransboundary and emerging diseases2021

First detection of porcine respirovirus 1 in Germany and the Netherlands.

Leonard Schuele, Erley Lizarazo-Forero, Hayley Cassidy, Katrin Strutzberg-Minder, Jan Boehmer, Sabine Schuetze, Sandra Loebert, Claudia Lambrecht, Juergen Harlizius, Alex W Friedrich and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Transboundary and emerging diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 4 countries.

Leonard SchueleUniversity of Groningen, University Medical Center Groningen, Department of Medical Microbiology and Infection Prevention, Groningen, The Netherlands.ORCID https://orcid.org/0000-0003-1721-5879
Erley Lizarazo-ForeroUniversity of Groningen, University Medical Center Groningen, Department of Medical Microbiology and Infection Prevention, Groningen, The Netherlands.ORCID https://orcid.org/0000-0003-2749-9780
Hayley CassidyUniversity of Groningen, University Medical Center Groningen, Department of Medical Microbiology and Infection Prevention, Groningen, The Netherlands.ORCID https://orcid.org/0000-0001-9087-3830
Katrin Strutzberg-MinderIVD Innovative Veterinary Diagnostics (IVD GmbH), Seelze, Germany.
Jan BoehmerIVD Innovative Veterinary Diagnostics (IVD GmbH), Seelze, Germany.
Sabine SchuetzeAnimal Health Services, Chamber of Agriculture of North Rhine-Westphalia, Bad Sassendorf, Germany.
Sandra LoebertAnimal Health Services, Chamber of Agriculture of North Rhine-Westphalia, Bad Sassendorf, Germany.
Claudia LambrechtAnimal Health Services, Chamber of Agriculture of North Rhine-Westphalia, Bad Sassendorf, Germany.
Juergen HarliziusAnimal Health Services, Chamber of Agriculture of North Rhine-Westphalia, Bad Sassendorf, Germany.
Alex W FriedrichUniversity of Groningen, University Medical Center Groningen, Department of Medical Microbiology and Infection Prevention, Groningen, The Netherlands.
Silke PeterInstitute of Medical Microbiology and Hygiene, University of Tübingen, Tübingen, Germany.
John W A RossenUniversity of Groningen, University Medical Center Groningen, Department of Medical Microbiology and Infection Prevention, Groningen, The Netherlands.
Natacha CoutoUniversity of Groningen, University Medical Center Groningen, Department of Medical Microbiology and Infection Prevention, Groningen, The Netherlands.ORCID https://orcid.org/0000-0002-9152-5464
University Medical Center Groningen · NLLandwirtschaftskammer Niedersachsen · DEInstitute of Medical Microbiology and Hygiene · DE

Funding

European Regional Development FundH2020 Marie Skłodowska-Curie Actions 713660
6 · The paper itself

Abstract

Porcine respirovirus 1, also referred to as porcine parainfluenza virus 1 (PPIV-1), was first detected in deceased pigs from Hong Kong in 2013. It has since then been found in the USA, Chile and most recently in Hungary. Information on the pathogenicity and global spread is sparse. However, it has been speculated to play a role in the porcine respiratory disease complex. To investigate the porcine virome, we screened 53 pig samples from 26 farms within the Dutch-German border region using shotgun metagenomics sequencing (SMg). After detecting PPIV-1 in five farms through SMg, a real-time reverse transcriptase PCR (RT-qPCR) assay was designed, which not only confirmed the presence of the virus in 1 of the 5 farms but found an additional 6 positive farms. Phylogenetic analysis found the closest match to be the first detected PPIV-1 strain in Hong Kong. The Dutch-German region represents a significant area of pig farming within Europe and could provide important information on the characterization and circulation of porcine viruses, such as PPIV-1. With its recent detection in Hungary, these findings suggest widespread circulation of PPIV-1 in Central Europe, highlighting the need for further research on persistence, pathogenicity and transmission in Europe.

Indexed as

Swine DiseasesAnimalsGermanyNetherlandsPhylogenyRespirovirusSwineEuropenext-generation sequencingporcine parainfluenza virus 1porcine respirovirus 1shotgun metagenomics sequencing

Identifiers

PMID33837672
PMCPMC9292642
OpenAlexW3151730455

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.