Evidence map›Paper›PMID 33837502›Full record

ArticlePlant molecular biology2021

Anthocyanin synthesis in orange carrot cv. Danvers is activated by transgene expression of the transcription factors DcMYB113_NB and DcEGL1_NB from black carrot cv. Nightbird.

Shrikant Sharma, Giuseppe Dionisio, Inger B Holme, Tsaneta Dzhanfezova, Bjarne Joernsgaard, Henrik Brinch-Pedersen

Abstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Shrikant Sharma *Department of Agroecology, Aarhus University, Research Center Flakkebjerg, DK-4200, Aarhus C, Denmark.ORCID http://orcid.org/0000-0002-0670-3060
Giuseppe Dionisio *Department of Agroecology, Aarhus University, Research Center Flakkebjerg, DK-4200, Aarhus C, Denmark.ORCID http://orcid.org/0000-0003-4416-0519
Inger B HolmeDepartment of Agroecology, Aarhus University, Research Center Flakkebjerg, DK-4200, Aarhus C, Denmark.ORCID http://orcid.org/0000-0001-5008-0086
Tsaneta DzhanfezovaChr. Hansen Natural Colors A/S, Agern Alle, 24 - 2970, Hoersholm, Denmark.
Bjarne JoernsgaardChr. Hansen Natural Colors A/S, Agern Alle, 24 - 2970, Hoersholm, Denmark.
Henrik Brinch-PedersenDepartment of Agroecology, Aarhus University, Research Center Flakkebjerg, DK-4200, Aarhus C, Denmark. hbp@mbg.au.dk.ORCID http://orcid.org/0000-0002-9773-8903
Aarhus University · DKChr. Hansen (Denmark) · DK

Funding

Innovationsfonden 4098-00043AInnovationsfonden 9067-00006B
6 · The paper itself

Abstract

Black carrots are potent sources of anthocyanin for the natural food color industry as their anthocyanins contain very high percentages of acylated anthocyanins which are much more stable than non-acylated anthocyanins. Anthocyanins are synthesized by a specific branch of the phenylpropanoid pathway activated by a triad of R2R3-MYB, bHLH and WD40 transcription factors (TFs). Recent studies in black carrots have elucidated major anthocyanin related structural genes and also regulatory TFs. However, the active TFs responsible for anthocyanin production in black carrots differ between cultivars. We have previously shown by RNAseq that DcMYB113 (LOC108213488), a R2R3-MYB TF, was up-regulated in colored as compared to non-colored tissues of the black carrots 'Superblack' and 'CH05544' and that this upregulation was positively correlated with anthocyanin content. However, this gene showed no upregulation in the black carrot 'Nightbird' also included in that study. In the present study, we present a novel R2R3-MYB DcMYB113_NB (LOC108212072) and a complementary bHLH DcEGL1_NB (LOC108210744) isolated from the RNA of 'Nightbird'. Their functionality as anthocyanin regulators was confirmed by their simultaneous expression under the control of a constitutive promoter in the background of the orange carrot 'Danvers 126'. Transformants showed activation of the structural anthocyanin genes and accumulation of anthocyanins across leaves, stems and taproots. Interestingly, the anthocyanin profile of the transformants showed increases of 20 to 30% in acylated anthocyanins as compared to 'Nightbird' resulting in transformants with almost 100% acylated anthocyanins.

Indexed as

AnthocyaninsBony CallusDaucus carotaGene Expression Regulation, PlantGenetic VectorsPlant ProteinsPlants, Genetically ModifiedTranscriptional ActivationTranscription FactorsTransgenesUp-RegulationAnthocyaninsPlant ProteinsTranscription FactorsAnthocyaninsBHLHBlack carrotsDcEGL1_NBDcMYB113_NBR2R3-MYB

Identifiers

PMID33837502
OpenAlexW3146210379

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.