Evidence map›Paper›PMID 33837194›Full record

ArticleNature communications2021

A bacterial small RNA regulates the adaptation of Helicobacter pylori to the host environment.

Ryo Kinoshita-Daitoku, Kotaro Kiga, Masatoshi Miyakoshi, Ryota Otsubo, Yoshitoshi Ogura, Takahito Sanada, Zhu Bo, Tuan Vo Phuoc, Tokuju Okano, Tamako Iida and 16 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
8.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 50 citations in OpenAlex.

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  6. Update on the pathogenesis and clinical management ofWorld journal of gastrointestinal pathophysiology · 2025
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  10. MicroRNA-Mediated Regulatory Networks inBiochemistry research international · 2025
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  11. Article
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  16. Review
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  19. Influence ofWorld journal of clinical oncology · 2022
    Review
  20. Insights into the Orchestration of Gene Transcription Regulators inInternational journal of molecular sciences · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 11 institutions in 2 countries.

Ryo Kinoshita-DaitokuDepartment of Infection Microbiology, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Kotaro KigaDivision of Bacteriology, Department of Infectious Diseases Control, International Research Center for Infectious Diseases, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan.
Masatoshi MiyakoshiDivision of Biomedical Science, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.ORCID 0000-0002-4901-2809
Ryota OtsuboDepartment of Infection Microbiology, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Yoshitoshi OguraDepartment of Bacteriology, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.
Takahito SanadaDepartment of Infection Microbiology, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Zhu BoDivision of Bacteriology, Department of Infectious Diseases Control, International Research Center for Infectious Diseases, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan.
Tuan Vo PhuocDepartment of Environmental and Preventive Medicine, Faculty of Medicine, Oita University, Yufu, Oita, Japan.
Tokuju OkanoDepartment of Bacterial Pathogenesis, Infection and Host Response, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, Tokyo, Japan.
Tamako IidaDivision of Bacteriology, Department of Infectious Diseases Control, International Research Center for Infectious Diseases, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan.
Rui YokomoriHuman Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan.
Eisuke KurodaDepartment of Infection Microbiology, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Sayaka HirukawaDivision of Bacteriology, Department of Infectious Diseases Control, International Research Center for Infectious Diseases, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan.
Mototsugu TanakaDivision of Bacteriology, Department of Infectious Diseases Control, International Research Center for Infectious Diseases, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan.
Arpana SoodDivision of Bacteriology, Department of Infectious Diseases Control, International Research Center for Infectious Diseases, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan.
Phawinee SubsomwongDepartment of Infection Microbiology, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Hiroshi AshidaDepartment of Bacterial Pathogenesis, Infection and Host Response, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, Tokyo, Japan.
Tran Thanh BinhDepartment of Environmental and Preventive Medicine, Faculty of Medicine, Oita University, Yufu, Oita, Japan.
Lam Tung NguyenDepartment of Environmental and Preventive Medicine, Faculty of Medicine, Oita University, Yufu, Oita, Japan.
Khien Vu VanDepartment of GI Endoscopy, 108 Central Hospital, Hanoi, Vietnam.
Dang Quy Dung HoDepartment of Endoscopy, Cho Ray Hospital, Ho Chi Minh, Vietnam.
Kenta NakaiHuman Genome Center, The Institute of Medical Science, The University of Tokyo, Tokyo, Japan.ORCID 0000-0002-8721-8883
Toshihiko SuzukiDepartment of Bacterial Pathogenesis, Infection and Host Response, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, Tokyo, Japan.
Yoshio YamaokaDepartment of Environmental and Preventive Medicine, Faculty of Medicine, Oita University, Yufu, Oita, Japan.ORCID 0000-0002-1222-5819
Tetsuya HayashiDepartment of Bacteriology, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.
Hitomi MimuroDepartment of Infection Microbiology, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan. mimuro@biken.osaka-u.ac.jp.ORCID 0000-0002-1464-745X
National Institute of Infectious Diseases · JPOita University · JPTokyo Medical and Dental University · JPThe University of Tokyo · JP108 Military Central Hospital · VNCho Ray Hospital · VNKurume University · JPKyushu University · JPThe University of Osaka · JPToyama Prefectural University · JPUniversity of Tsukuba · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Long-term infection of the stomach with Helicobacter pylori can cause gastric cancer. However, the mechanisms by which the bacteria adapt to the stomach environment are poorly understood. Here, we show that a small non-coding RNA of H. pylori (HPnc4160, also known as IsoB or NikS) regulates the pathogen's adaptation to the host environment as well as bacterial oncoprotein production. In a rodent model of H. pylori infection, the genomes of bacteria isolated from the stomach possess an increased number of T-repeats upstream of the HPnc4160-coding region, and this leads to reduced HPnc4160 expression. We use RNA-seq and iTRAQ analyses to identify eight targets of HPnc4160, including genes encoding outer membrane proteins and oncoprotein CagA. Mutant strains with HPnc4160 deficiency display increased colonization ability of the mouse stomach, in comparison with the wild-type strain. Furthermore, HPnc4160 expression is lower in clinical isolates from gastric cancer patients than in isolates derived from non-cancer patients, while the expression of HPnc4160's targets is higher in the isolates from gastric cancer patients. Therefore, the small RNA HPnc4160 regulates H. pylori adaptation to the host environment and, potentially, gastric carcinogenesis.

Indexed as

Adaptation, PhysiologicalAnimalsAntigens, BacterialBacterial ProteinsCarcinogenesisDisease Models, AnimalGastric MucosaGene Expression Regulation, BacterialGenome, BacterialGerbillinaeHelicobacter InfectionsHelicobacter pyloriHost Microbial InteractionsHumansMaleMutationAntigens, BacterialBacterial ProteinscagA protein, Helicobacter pyloriRNA, BacterialRNA, Small Untranslated

Identifiers

PMID33837194
PMCPMC8035401
OpenAlexW3140541638

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.