Evidence map›Paper›PMID 33837077›Full record

ArticleScience advances2021

Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae.

Liam P Shaw, Kevin K Chau, James Kavanagh, Manal AbuOun, Emma Stubberfield, H Soon Gweon, Leanne Barker, Gillian Rodger, Mike J Bowes, Alasdair T M Hubbard and 15 more

Abstract read
In one paragraph

Article in Science advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Review
  4. Genomic Surveillance of ESBL-ProducingPathogens (Basel, Switzerland) · 2026
    Article
  5. Article
  6. Article
  7. Review
  8. Are the genomes of motileMicrobial genomics · 2026
    Article
  9. Article
  10. Genomic surveillance ofMicrobial genomics · 2026
    Article
  11. Article
  12. Transfer potential of F-like plasmids inISME communications · 2026
    Article
  13. Whole-Genome Analysis ofAntibiotics (Basel, Switzerland) · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. The extended mobility of plasmids.Nucleic acids research · 2025
    Review
  19. Article
  20. Universal rules govern plasmid copy number.Nature communications · 2025
    Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Liam P ShawNuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford OX3 9DU, UK. liam.philip.shaw@gmail.com nicole.stoesser@ndm.ox.ac.uk.ORCID 0000-0001-7332-0820
Kevin K ChauNuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford OX3 9DU, UK.ORCID 0000-0002-6926-080X
James KavanaghNuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford OX3 9DU, UK.ORCID 0000-0003-1495-0843
Manal AbuOunDepartment of Bacteriology, Animal and Plant Health Agency (APHA), Woodham Lane, Addlestone, Surrey KT15 3NB, UK.ORCID 0000-0003-4190-1473
Emma StubberfieldDepartment of Bacteriology, Animal and Plant Health Agency (APHA), Woodham Lane, Addlestone, Surrey KT15 3NB, UK.ORCID 0000-0002-5527-1209
H Soon GweonUK Centre for Ecology & Hydrology (UKCEH), Benson Lane, Crowmarsh Gifford, Wallingford OX10 8BB, UK.ORCID 0000-0002-6218-6301
Leanne BarkerNuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford OX3 9DU, UK.
Gillian RodgerNuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford OX3 9DU, UK.ORCID 0000-0001-6051-8985
Mike J BowesUK Centre for Ecology & Hydrology (UKCEH), Benson Lane, Crowmarsh Gifford, Wallingford OX10 8BB, UK.ORCID 0000-0002-0673-1934
Alasdair T M HubbardNuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford OX3 9DU, UK.
Hayleah PickfordNuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford OX3 9DU, UK.
Jeremy SwannNuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford OX3 9DU, UK.ORCID 0000-0002-1475-8248
Daniel GilsonDepartment of Epidemiological Sciences, The Animal and Plant Health Agency (APHA), Woodham Lane, Addlestone, Surrey KT15 3NB, UK.ORCID 0000-0002-3713-1966
Richard P SmithDepartment of Epidemiological Sciences, The Animal and Plant Health Agency (APHA), Woodham Lane, Addlestone, Surrey KT15 3NB, UK.
Sarah J HoosdallyNuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford OX3 9DU, UK.
Robert SebraDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Howard BrettThames Water Utilities, Clearwater Court, Vastern Road, Reading RG1 8DB, UK.ORCID 0000-0002-4100-8565
Tim E A PetoNuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford OX3 9DU, UK.
Mark J BaileyUK Centre for Ecology & Hydrology (UKCEH), Benson Lane, Crowmarsh Gifford, Wallingford OX10 8BB, UK.
Derrick W CrookNuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford OX3 9DU, UK.ORCID 0000-0002-0590-2850
Daniel S ReadUK Centre for Ecology & Hydrology (UKCEH), Benson Lane, Crowmarsh Gifford, Wallingford OX10 8BB, UK.ORCID 0000-0001-8546-5154
Muna F AnjumDepartment of Bacteriology, Animal and Plant Health Agency (APHA), Woodham Lane, Addlestone, Surrey KT15 3NB, UK.
A Sarah WalkerNuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford OX3 9DU, UK.ORCID 0000-0002-0412-8509
Nicole StoesserNuffield Department of Medicine, John Radcliffe Hospital, University of Oxford, Oxford OX3 9DU, UK. liam.philip.shaw@gmail.com nicole.stoesser@ndm.ox.ac.uk.ORCID 0000-0002-4508-7969
REHAB consortium

Funding

Wellcome Trust
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Identifiers

PMID33837077
PMCPMC8034854

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.