Evidence map›Paper›PMID 33833946›Full record

ArticleAfrican journal of laboratory medicine2021

Performance of International AIDS Vaccine Initiative African clinical research laboratories in standardised ELISpot and peripheral blood mononuclear cell processing in support of HIV vaccine clinical trials.

Robert K Langat, Bashir Farah, Jackton Indangasi, Simon Ogola, Gloria Omosa-Manyonyi, Omu Anzala, Jean Bizimana, Emmanuel Tekirya, Caroline Ngetsa, Moses Silwamba and 8 more

Open access · diamondAbstract read
In one paragraph

Article in African journal of laboratory medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 10 institutions in 6 countries.

Robert K LangatKenya AIDS Vaccine Initiative, Institute of Clinical Research, University of Nairobi, Nairobi, Kenya.ORCID https://orcid.org/0000-0001-9142-886X
Bashir FarahKenya AIDS Vaccine Initiative, Institute of Clinical Research, University of Nairobi, Nairobi, Kenya.ORCID https://orcid.org/0000-0002-2666-2243
Jackton IndangasiKenya AIDS Vaccine Initiative, Institute of Clinical Research, University of Nairobi, Nairobi, Kenya.ORCID https://orcid.org/0000-0003-0170-8898
Simon OgolaKenya AIDS Vaccine Initiative, Institute of Clinical Research, University of Nairobi, Nairobi, Kenya.ORCID https://orcid.org/0000-0002-3856-4261
Gloria Omosa-ManyonyiKenya AIDS Vaccine Initiative, Institute of Clinical Research, University of Nairobi, Nairobi, Kenya.ORCID https://orcid.org/0000-0002-4019-8977
Omu AnzalaKenya AIDS Vaccine Initiative, Institute of Clinical Research, University of Nairobi, Nairobi, Kenya.ORCID https://orcid.org/0000-0001-5186-1415
Jean BizimanaProjet San Francisco, Kigali, Rwanda.ORCID https://orcid.org/0000-0001-5562-2788
Emmanuel TekiryaProjet San Francisco, Kigali, Rwanda.ORCID https://orcid.org/0000-0002-8895-0881
Caroline NgetsaKenya Medical Research Institute Centre for Geographical Medicine Research Coast, Mombasa, Kenya.ORCID https://orcid.org/0000-0001-8827-7685
Moses SilwambaZambia EMORY HIV Research Project, Lusaka, Zambia.ORCID https://orcid.org/0000-0002-3112-401X
Enoch MuyanjaUgandan Virus Research Institute-IAVI, Entebbe, Uganda.ORCID https://orcid.org/0000-0002-5454-149X
Paramesh ChettyInternational AIDS Vaccine Initiative, Johannesburg, South Africa.ORCID https://orcid.org/0000-0001-8378-2666
Maureen JanganoClinical Laboratory Services, Johannesburg, South Africa.ORCID https://orcid.org/0000-0003-0604-6774
Nancy HillsSchool of Medicine, University of California, San Francisco, California, United States.ORCID https://orcid.org/0000-0002-1041-8182
Jill GilmourInternational AIDS Vaccine Initiative (IAVI), Human Immunology Laboratory, Imperial College, London, United Kingdom.ORCID https://orcid.org/0000-0002-6778-7720
Len DallyEmmes Corporation, Rockville, Maryland, United States.ORCID https://orcid.org/0000-0003-0386-0172
Josephine H CoxClinical Trials Program, Vaccine Research Center, National Institutes of Health, Bethesda, Maryland, United States.ORCID https://orcid.org/0000-0003-1301-7373
Peter HayesInternational AIDS Vaccine Initiative (IAVI), Human Immunology Laboratory, Imperial College, London, United Kingdom.ORCID https://orcid.org/0000-0002-1251-934X
Kenya AIDS Vaccine Initiative · KEInternational AIDS Vaccine Initiative · USInternational HIV/AIDS Alliance · GBEmmes (United States) · USKenya Medical Research Institute · KENational HIV/AIDS/STI/TB Council · ZMNational Institutes of Health Clinical Center · USUganda Virus Research Institute · UGUniversity of California, San Francisco · USUniversity of Nairobi · KE

Funding

Int'l Traineeships in AIDS Prevention Studies (ITAPS)R25MH064712 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LINDAN, CHRISTINA P · 2002 to 2018
$3.4M
International Traineeships in AIDS Prevention Studies (ITAPS)R25MH123256 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHRISTINA P LINDAN · 2020 to 2026
$1.8M
NIMH NIH HHS R25 MH064712NIMH NIH HHS R25 MH123256
6 · The paper itself

Abstract

backgroundStandardisation of procedures for performing cellular functional assays across laboratories participating in multicentre clinical trials is key for generating comparable and reliable data.

objectiveThis article describes the performance of accredited laboratories in Africa and Europe on testing done in support of clinical trials.

methodsFor enzyme-linked immunospot assay (ELISpot) proficiency, characterised peripheral blood mononuclear cells (PBMCs) obtained from 48 HIV-negative blood donors in Johannesburg, South Africa, were sent to participating laboratories between February 2010 and February 2014. The PBMCs were tested for responses against cytomegalovirus, Epstein Barr and influenza peptide pools in a total of 1751 assays. In a separate study, a total of 1297 PBMC samples isolated from healthy HIV-negative participants in clinical trials of two prophylactic HIV vaccine candidates in Kenya, Uganda, Rwanda and Zambia were analysed for cell viability, cell yield and cell recovery from frozen PBMCs.

resultsMost (99%) of the 1751 ELISpot proficiency assays had data within acceptable ranges with low responses to mock stimuli. No significant statistical difference were observed in ELISpot responses at the five laboratories actively conducting immunological analyses. Of the 1297 clinical trial PBMCs processed, 94% had cell viability above 90% and 96% had cell yield above 0.7 million per mL of blood in freshly isolated cells. All parameters were within the predefined acceptance criteria.

conclusionWe demonstrate that multiple laboratories can generate reliable, accurate and comparable data by using standardised procedures, having regular training, having regular equipment maintenance and using centrally sourced reagents.

Indexed as

clinical trialsELISpotgood clinical laboratory practicePBMC processingperipheral blood mononuclear cellsproficiency testing

Identifiers

PMID33833946
PMCPMC8014752
OpenAlexW3131806020

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.