Evidence map›Paper›PMID 33833453›Full record

ArticleNature genetics2021

Silencing of LINE-1 retrotransposons is a selective dependency of myeloid leukemia.

Zhimin Gu, Yuxuan Liu, Yuannyu Zhang, Hui Cao, Junhua Lyu, Xun Wang, Annika Wylie, Simon J Newkirk, Amanda E Jones, Michael Lee and 7 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed, 1 pooled it
15.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 1 synthesis or guideline pooled it, 108 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. TEITbase: a database for transposable element (TE)-initiated transcripts in human cancers.Database : the journal of biological databases and curation · 2026
    Article
  14. Article
  15. Article
  16. Revisiting Clonal Evolution Through the Light of Retrotransposons.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  17. Article
  18. Article
  19. Article
  20. Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 1 country.

Zhimin Gu *Children's Medical Center Research Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Yuxuan Liu *Children's Medical Center Research Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Yuannyu ZhangChildren's Medical Center Research Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Hui CaoChildren's Medical Center Research Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Junhua LyuChildren's Medical Center Research Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Xun WangChildren's Medical Center Research Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0000-0001-5172-0305
Annika WylieDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Simon J NewkirkDepartment of Pharmaceutical Sciences, South Dakota State University, Brookings, SD, USA.
Amanda E JonesDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Michael LeeChildren's Medical Center Research Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Giovanni A BottenChildren's Medical Center Research Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0000-0001-8054-8030
Mi DengDepartment of Physiology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Kathryn E DickersonChildren's Medical Center Research Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Cheng Cheng ZhangDepartment of Physiology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Wenfeng AnDepartment of Pharmaceutical Sciences, South Dakota State University, Brookings, SD, USA.ORCID http://orcid.org/0000-0002-5659-7120
John M AbramsDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Jian XuChildren's Medical Center Research Institute, University of Texas Southwestern Medical Center, Dallas, TX, USA. jian.xu@utsouthwestern.edu.ORCID http://orcid.org/0000-0003-1988-7337
Children's Medical Center · USThe University of Texas Southwestern Medical Center · USSouth Dakota State University · USSouthwestern Medical Center · US

Funding

Cancer Biology Training GrantT32CA124334 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI SHAY, JERRY WILLIAM · 2007 to 2021
$5.3M
Molecular Analysis of Transcriptional Enhancers in HematopoiesisR01DK111430 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI Jian Xu · 2016 to 2026
$4.8M
ITIM-receptors for cancer treatmentR01CA248736 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI ZHANG, CHENGCHENG · 2020 to 2024
$2.9M
Suppression of mobile elements by p53 genesR01GM115682 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI ABRAMS, JOHN M · 2015 to 2024
$2.7M
Targeting Metabolic Liabilities of Leukemia-Initiating Cells (R01CA230631)R01CA230631 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI XU, JIAN · 2019 to 2023
$1.8M
Tumor suppression, p53 and retrotransposonsR01CA222579 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI ABRAMS, JOHN M · 2018 to 2022
$1.8M
Developmental timing of LINE-1 retrotransposition in mouse modelsR15GM131263 · NIGMS · SOUTH DAKOTA STATE UNIVERSITY · PI AN, WENFENG · 2018 to 2018
$425k
Novel Transgenic Mouse Models for L1 Retrotransposons in Development and DiseaseR21OD017965 · OD · SOUTH DAKOTA STATE UNIVERSITY · PI AN, WENFENG · 2015 to 2016
$393k
NCI NIH HHS R01 CA222579NCI NIH HHS R01 CA230631NCI NIH HHS R01 CA248736NCI NIH HHS T32 CA124334NIDDK NIH HHS R01 DK111430NIGMS NIH HHS R01 GM115682NIGMS NIH HHS R15 GM131263NIH HHS R21 OD017965
6 · The paper itself

Abstract

Transposable elements or transposons are major players in genetic variability and genome evolution. Aberrant activation of long interspersed element-1 (LINE-1 or L1) retrotransposons is common in human cancers, yet their tumor-type-specific functions are poorly characterized. We identified MPHOSPH8/MPP8, a component of the human silencing hub (HUSH) complex, as an acute myeloid leukemia (AML)-selective dependency by epigenetic regulator-focused CRISPR screening. Although MPP8 is dispensable for steady-state hematopoiesis, MPP8 loss inhibits AML development by reactivating L1s to induce the DNA damage response and cell cycle exit. Activation of endogenous or ectopic L1s mimics the phenotype of MPP8 loss, whereas blocking retrotransposition abrogates MPP8-deficiency-induced phenotypes. Expression of AML oncogenic mutations promotes L1 suppression, and enhanced L1 silencing is associated with poor prognosis in human AML. Hence, while retrotransposons are commonly recognized for their cancer-promoting functions, we describe a tumor-suppressive role for L1 retrotransposons in myeloid leukemia.

Indexed as

Gene SilencingAnimalsCarcinogenesisCell Line, TumorCRISPR-Cas SystemsEpigenesis, GeneticGene Expression Regulation, LeukemicGenome, HumanGenomic InstabilityHematopoiesisHumansLeukemia, MyeloidLong Interspersed Nucleotide ElementsMiceMice, Inbred C57BLMice, KnockoutMPHOSPH8 protein, humanPhosphoproteins

Identifiers

PMID33833453
PMCPMC8270111
OpenAlexW3144073050

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.