Evidence map›Paper›PMID 33833385›Full record

ArticleLeukemia2021

Temporal multiomic modeling reveals a B-cell receptor proliferative program in chronic lymphocytic leukemia.

Cedric Schleiss, Raphael Carapito, Luc-Matthieu Fornecker, Leslie Muller, Nicodème Paul, Ouria Tahar, Angelique Pichot, Manuela Tavian, Alina Nicolae, Laurent Miguet and 9 more

Open access · hybridAbstract read
In one paragraph

Article in Leukemia, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 2 institutions in 1 country.

Cedric SchleissLaboratoire d'ImmunoRhumatologie Moléculaire, INSERM UMR-S1109, LabEx Transplantex, Plateforme Genomax, Fédération de Médecine Translationnelle de Strasbourg (FMTS), Université de Strasbourg, Strasbourg, France.ORCID http://orcid.org/0000-0003-3062-2161
Raphael CarapitoLaboratoire d'ImmunoRhumatologie Moléculaire, INSERM UMR-S1109, LabEx Transplantex, Plateforme Genomax, Fédération de Médecine Translationnelle de Strasbourg (FMTS), Université de Strasbourg, Strasbourg, France.ORCID http://orcid.org/0000-0002-7036-442X
Luc-Matthieu ForneckerUniversité de Strasbourg, INSERM, IRFAC UMR-S1113, Strasbourg, France.ORCID http://orcid.org/0000-0002-1866-971X
Leslie MullerLaboratoire de Spectrométrie de Masse BioOrganique, Université de Strasbourg, CNRS, IPHC, UMR 7178, Strasbourg, France.
Nicodème PaulLaboratoire d'ImmunoRhumatologie Moléculaire, INSERM UMR-S1109, LabEx Transplantex, Plateforme Genomax, Fédération de Médecine Translationnelle de Strasbourg (FMTS), Université de Strasbourg, Strasbourg, France.ORCID http://orcid.org/0000-0003-4680-3012
Ouria TaharLaboratoire d'ImmunoRhumatologie Moléculaire, INSERM UMR-S1109, LabEx Transplantex, Plateforme Genomax, Fédération de Médecine Translationnelle de Strasbourg (FMTS), Université de Strasbourg, Strasbourg, France.
Angelique PichotLaboratoire d'ImmunoRhumatologie Moléculaire, INSERM UMR-S1109, LabEx Transplantex, Plateforme Genomax, Fédération de Médecine Translationnelle de Strasbourg (FMTS), Université de Strasbourg, Strasbourg, France.ORCID http://orcid.org/0000-0003-2515-5538
Manuela TavianUniversité de Strasbourg, INSERM, IRFAC UMR-S1113, Strasbourg, France.
Alina NicolaeUniversité de Strasbourg, INSERM, IRFAC UMR-S1113, Strasbourg, France.
Laurent MiguetUniversité de Strasbourg, INSERM, IRFAC UMR-S1113, Strasbourg, France.
Laurent MauvieuxUniversité de Strasbourg, INSERM, IRFAC UMR-S1113, Strasbourg, France.ORCID http://orcid.org/0000-0002-9043-1845
Raoul HerbrechtUniversité de Strasbourg, INSERM, IRFAC UMR-S1113, Strasbourg, France.
Sarah CianferaniLaboratoire de Spectrométrie de Masse BioOrganique, Université de Strasbourg, CNRS, IPHC, UMR 7178, Strasbourg, France.ORCID http://orcid.org/0000-0003-4013-4129
Jean-Noel FreundUniversité de Strasbourg, INSERM, IRFAC UMR-S1113, Strasbourg, France.ORCID http://orcid.org/0000-0002-0971-3774
Christine CarapitoLaboratoire de Spectrométrie de Masse BioOrganique, Université de Strasbourg, CNRS, IPHC, UMR 7178, Strasbourg, France.ORCID http://orcid.org/0000-0002-0079-319X
Myriam Maumy-BertrandFédération Hospitalo-Universitaire (FHU) Omicare, Université de Strasbourg, Strasbourg, France.ORCID http://orcid.org/0000-0002-4615-1512
Seiamak BahramLaboratoire d'ImmunoRhumatologie Moléculaire, INSERM UMR-S1109, LabEx Transplantex, Plateforme Genomax, Fédération de Médecine Translationnelle de Strasbourg (FMTS), Université de Strasbourg, Strasbourg, France.ORCID http://orcid.org/0000-0002-6928-9952
Frederic Bertrand *Institut de Recherche Mathématique Avancée, CNRS UMR 7501, LabEx IRMIA, Université de Strasbourg, Strasbourg, France. fbertran@unistra.fr.ORCID http://orcid.org/0000-0002-0837-8281
Laurent Vallat *Laboratoire d'ImmunoRhumatologie Moléculaire, INSERM UMR-S1109, LabEx Transplantex, Plateforme Genomax, Fédération de Médecine Translationnelle de Strasbourg (FMTS), Université de Strasbourg, Strasbourg, France. vallat@unistra.fr.ORCID http://orcid.org/0000-0002-5226-7706
Inserm · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

B-cell receptor (BCR) signaling is crucial for the pathophysiology of most mature B-cell lymphomas/leukemias and has emerged as a therapeutic target whose effectiveness remains limited by the occurrence of mutations. Therefore, deciphering the cellular program activated downstream this pathway has become of paramount importance for the development of innovative therapies. Using an original ex vivo model of BCR-induced proliferation of chronic lymphocytic leukemia cells, we generated 108 temporal transcriptional and proteomic profiles from 1 h up to 4 days after BCR activation. This dataset revealed a structured temporal response composed of 13,065 transcripts and 4027 proteins, comprising a leukemic proliferative signature consisting of 430 genes and 374 proteins. Mathematical modeling of this complex cellular response further highlighted a transcriptional network driven by 14 early genes linked to proteins involved in cell proliferation. This group includes expected genes (EGR1/2, NF-kB) and genes involved in NF-kB signaling modulation (TANK, ROHF) and immune evasion (KMO, IL4I1) that have not yet been associated with leukemic cells proliferation. Our study unveils the BCR-activated proliferative genetic program in primary leukemic cells. This approach combining temporal measurements with modeling allows identifying new putative targets for innovative therapy of lymphoid malignancies and also cancers dependent on ligand-receptor interactions.

Indexed as

AgedB-LymphocytesCell ProliferationFemaleHumansLeukemia, Lymphocytic, Chronic, B-CellLymphocyte ActivationMaleMiddle AgedProteomeProteomicsReceptors, Antigen, B-CellSignal TransductionTranscription, GeneticProteomeReceptors, Antigen, B-Cell

Identifiers

PMID33833385
PMCPMC8102193
OpenAlexW3143646353

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.