Evidence map›Paper›PMID 33831389›Full record

ArticleBiophysical journal2021

Development and application of multicolor burst analysis spectroscopy.

Daniel Shoup, Andrew Roth, Rajan Thapa, Jason Puchalla, Hays S Rye

Abstract read
In one paragraph

Article in Biophysical journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Daniel ShoupDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, Texas.
Andrew RothDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, Texas.
Rajan ThapaDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, Texas.
Jason PuchallaDepartment of Physics, Princeton University, Princeton, New Jersey. Electronic address: puchalla@princeton.edu.
Hays S RyeDepartment of Biochemistry and Biophysics, Texas A&M University, College Station, Texas. Electronic address: haysrye@tamu.edu.

Funding

Mechanisms of Chaperonin-Mediated Protein FoldingR01GM065421 · NIGMS · TEXAS A&M UNIVERSITY · PI RYE, HAYS S · 2003 to 2013
$2.5M
Mechanism of protein aggregate recognition and disassembly by molecular chaperonesR01GM134063 · NIGMS · TEXAS A&M AGRILIFE RESEARCH · PI RYE, HAYS S · 2019 to 2022
$1.4M
Mechanism of membrane fission at the recycling endosomeR01GM114405 · NIGMS · TEXAS A&M AGRILIFE RESEARCH · PI RYE, HAYS S · 2015 to 2018
$1.2M
NIGMS NIH HHS R01 GM065421NIGMS NIH HHS R01 GM114405NIGMS NIH HHS R01 GM134063
6 · The paper itself

Abstract

The formation and disassembly of macromolecular particles is a ubiquitous and essential feature of virtually all living organisms. Additionally, diseases are often associated with the accumulation and propagation of biologically active nanoparticles, like the formation of toxic protein aggregates in protein misfolding diseases and the growth of infectious viral particles. The heterogeneous and dynamic nature of biologically active particles can make them exceedingly challenging to study. The single-particle fluorescence technique known as burst analysis spectroscopy (BAS) was developed to facilitate real-time measurement of macromolecular particle distributions in the submicron range in a minimally perturbing, free-solution environment. Here, we develop a multicolor version of BAS and employ it to examine two problems in macromolecular assembly: 1) the extent of DNA packing heterogeneity in bacteriophage viral particles and 2) growth models of non-native protein aggregates. We show that multicolor BAS provides a powerful and flexible approach to studying hidden properties of important biological particles like viruses and protein aggregates.

Indexed as

NanoparticlesProteinsParticle SizeSpectrum AnalysisProteins

Identifiers

PMID33831389
PMCPMC8390798

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.