Evidence map›Paper›PMID 33830999›Full record

ArticlePLoS genetics2021

PLD3 is a neuronal lysosomal phospholipase D associated with β-amyloid plaques and cognitive function in Alzheimer's disease.

Alex G Nackenoff, Timothy J Hohman, Sarah M Neuner, Carolyn S Akers, Nicole C Weitzel, Alena Shostak, Shawn M Ferguson, Bret Mobley, David A Bennett, Julie A Schneider and 3 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 58 citations in OpenAlex.

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  11. Inhibition of amyloid beta oligomer accumulation by NU-9: A unifying mechanism for the treatment of neurodegenerative diseases.Proceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Alex G NackenoffDepartment of Neurology, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.ORCID 0000-0002-6763-1953
Timothy J HohmanDepartment of Neurology, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.ORCID 0000-0002-3377-7014
Sarah M NeunerThe Jackson Laboratory, Bar Harbor, Maine, United States of America.
Carolyn S AkersDepartment of Neurology, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.ORCID 0000-0001-9367-6795
Nicole C WeitzelDepartment of Neurology, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.ORCID 0000-0001-8240-8883
Alena ShostakDepartment of Neurology, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Shawn M FergusonDepartment of Cell Biology, Yale University, New Haven, Connecticut, United States of America.
Bret MobleyDepartment of Pathology, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
David A BennettRush Alzheimer's Disease Center, Rush University Medical Center, Chicago, Illinois, United States of America.
Julie A SchneiderRush Alzheimer's Disease Center, Rush University Medical Center, Chicago, Illinois, United States of America.
Angela L JeffersonDepartment of Neurology, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Catherine C KaczorowskiThe Jackson Laboratory, Bar Harbor, Maine, United States of America.ORCID 0000-0001-5430-0816
Matthew S SchragDepartment of Neurology, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America.
Vanderbilt University Medical Center · USJackson Laboratory · USRush University Medical Center · USYale University · US

Funding

Systems Genetics Analysis of Resilience to Alzheimers diseaseR01AG057914 · NIA · JACKSON LABORATORY · PI KACZOROWSKI, CATHERINE COOK · 2017 to 2021
$7.0M
Systems Control of Normal Aging and Alzheimer's DiseaseR01AG054180 · NIA · JACKSON LABORATORY · PI KACZOROWSKI, CATHERINE COOK · 2017 to 2021
$4.4M
Genetic Drivers of Resilience to Alzheimer's DiseaseR01AG059716 · NIA · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HOHMAN, TIMOTHY J · 2018 to 2022
$4.4M
Vanderbilt Interdisciplinary Training Program in Alzheimer's DiseaseT32AG058524 · NIA · VANDERBILT UNIVERSITY · PI ANGELA L. JEFFERSON · 2018 to 2026
$3.5M
Risk factors and prevention targets for abnormal cognitive agingK24AG046373 · NIA · VANDERBILT UNIVERSITY MEDICAL CENTER · PI JEFFERSON, ANGELA L. · 2014 to 2023
$1.7M
Defective lysosomal membrane fission mediates axonal lysosome accumulation in dystrophic neurites in Alzheimer's disease.K76AG060001 · NIA · VANDERBILT UNIVERSITY MEDICAL CENTER · PI SCHRAG, MATTHEW · 2019 to 2023
$1.2M
Genetic Resilience to the Clinical Manifestation of DementiaK01AG049164 · NIA · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HOHMAN, TIMOTHY J · 2016 to 2020
$595k
Sex-Specific Genetic Drivers of Alzheimer's Disease NeuropathologyR21AG059941 · NIA · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HOHMAN, TIMOTHY J · 2018 to 2019
$435k
Cerebral Microvascular Network Alterations in Alzheimer's Disease and Cerebral Amyloid AngiopathyR03NS111486 · NINDS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI SCHRAG, MATTHEW · 2019 to 2019
$340k
Identification of Genetic Modifiers of Neuronal Deficits and Memory Failure in Alzheimers DiseaseF31AG050357 · NIA · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI NEUNER, SARAH M · 2015 to 2018
$171k
NIA NIH HHS F31 AG050357NIA NIH HHS K01 AG049164NIA NIH HHS K24 AG046373NIA NIH HHS K76 AG060001NIA NIH HHS R01 AG054180NIA NIH HHS R01 AG057914NIA NIH HHS R01 AG059716NIA NIH HHS R21 AG059941NIA NIH HHS T32 AG058524NINDS NIH HHS R03 NS111486
6 · The paper itself

Abstract

Phospholipase D3 (PLD3) is a protein of unclear function that structurally resembles other members of the phospholipase D superfamily. A coding variant in this gene confers increased risk for the development of Alzheimer's disease (AD), although the magnitude of this effect has been controversial. Because of the potential significance of this obscure protein, we undertook a study to observe its distribution in normal human brain and AD-affected brain, determine whether PLD3 is relevant to memory and cognition in sporadic AD, and to evaluate its molecular function. In human neuropathological samples, PLD3 was primarily found within neurons and colocalized with lysosome markers (LAMP2, progranulin, and cathepsins D and B). This colocalization was also present in AD brain with prominent enrichment on lysosomal accumulations within dystrophic neurites surrounding β-amyloid plaques. This pattern of protein distribution was conserved in mouse brain in wild type and the 5xFAD mouse model of cerebral β-amyloidosis. We discovered PLD3 has phospholipase D activity in lysosomes. A coding variant in PLD3 reported to confer AD risk significantly reduced enzymatic activity compared to wild-type PLD3. PLD3 mRNA levels in the human pre-frontal cortex inversely correlated with β-amyloid pathology severity and rate of cognitive decline in 531 participants enrolled in the Religious Orders Study and Rush Memory and Aging Project. PLD3 levels across genetically diverse BXD mouse strains and strains crossed with 5xFAD mice correlated strongly with learning and memory performance in a fear conditioning task. In summary, this study identified a new functional mammalian phospholipase D isoform which is lysosomal and closely associated with both β-amyloid pathology and cognition.

Indexed as

Genetic Predisposition to DiseaseAlzheimer DiseaseAnimalsAutopsyCognitive DysfunctionDisease Models, AnimalExodeoxyribonucleasesHeLa CellsHumansLysosomesMiceNeuronsPhospholipase DPlaque, AmyloidExodeoxyribonucleasesPhospholipase DPld3 protein, mouse

Identifiers

PMID33830999
PMCPMC8031396
OpenAlexW3146592250

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.