Evidence map›Paper›PMID 33828140›Full record

ArticleScientific reports2021

Fluorescence based rapid optical volume screening system (OVSS) for interrogating multicellular organisms.

Jigmi Basumatary, Tarannum Ara, Amartya Mukherjee, Debanjan Dutta, Upendra Nongthomba, Partha Pratim Mondal

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.0field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jigmi BasumataryNanobioimaging Lab., Department of Instrumentation and Applied Physics, Indian Institute of Science, Bangalore, 560012, India.
Tarannum AraNanobioimaging Lab., Department of Instrumentation and Applied Physics, Indian Institute of Science, Bangalore, 560012, India.
Amartya MukherjeeDepartment of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bangalore, 560012, India.
Debanjan DuttaDepartment of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bangalore, 560012, India.
Upendra NongthombaDepartment of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bangalore, 560012, India.
Partha Pratim MondalNanobioimaging Lab., Department of Instrumentation and Applied Physics, Indian Institute of Science, Bangalore, 560012, India. partha@iisc.ac.in.
Indian Institute of Science Bangalore · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Continuous monitoring of large specimens for long durations requires fast volume imaging. This is essential for understanding the processes occurring during the developmental stages of multicellular organisms. One of the key obstacles of fluorescence based prolonged monitoring and data collection is photobleaching. To capture the biological processes and simultaneously overcome the effect of bleaching, we developed single- and multi-color lightsheet based OVSS imaging technique that enables rapid screening of multiple tissues in an organism. Our approach based on OVSS imaging employs quantized step rotation of the specimen to record 2D angular data that reduces data acquisition time when compared to the existing light sheet imaging system (SPIM). A co-planar multicolor light sheet PSF is introduced to illuminate the tissues labelled with spectrally-separated fluorescent probes. The detection is carried out using a dual-channel sub-system that can simultaneously record spectrally separate volume stacks of the target organ. Arduino-based control systems were employed to automatize and control the volume data acquisition process. To illustrate the advantages of our approach, we have noninvasively imaged the Drosophila larvae and Zebrafish embryo. Dynamic studies of multiple organs (muscle and yolk-sac) in Zebrafish for a prolonged duration (5 days) were carried out to understand muscle structuring (Dystrophin, microfibers), primitive Macrophages (in yolk-sac) and inter-dependent lipid and protein-based metabolism. The volume-based study, intensity line-plots and inter-dependence ratio analysis allowed us to understand the transition from lipid-based metabolism to protein-based metabolism during early development (Pharyngula period with a critical transition time, [Formula: see text] h post-fertilization) in Zebrafish. The advantage of multicolor lightsheet illumination, fast volume scanning, simultaneous visualization of multiple organs and an order-less photobleaching makes OVSS imaging the system of choice for rapid monitoring and real-time assessment of macroscopic biological organisms with microscopic resolution.

Indexed as

AnimalsDrosophilaEmbryo, NonmammalianFluorescenceImage Processing, Computer-AssistedLarvaMicroscopy, FluorescenceOptical DevicesOptical ImagingPhotobleachingZebrafish

Identifiers

PMID33828140
PMCPMC8027194
OpenAlexW3151710765

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.