Evidence map›Paper›PMID 33828130›Full record

ArticleScientific reports2021

Cytotoxic T-lymphocyte elicited vaccine against SARS-CoV-2 employing immunoinformatics framework.

Neeraj Kumar, Nikita Admane, Anchala Kumari, Damini Sood, Sonam Grover, Vijay Kumar Prajapati, Ramesh Chandra, Abhinav Grover

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Neeraj Kumar *Department of Chemistry, University of Delhi, Delhi, 110007, India.
Nikita Admane *Department of Biotechnology, Jawahar Lal Nehru University, Delhi, 110067, India.
Anchala KumariDepartment of Biotechnology, Jawahar Lal Nehru University, Delhi, 110067, India.
Damini SoodDepartment of Chemistry, University of Delhi, Delhi, 110007, India.
Sonam GroverJH-Institute of Molecular Medicine, Jamia Hamdard, Hamdard Nagar, Delhi, 110062, India.
Vijay Kumar PrajapatiDepartment of Biochemistry, School of Life Sciences, Central University of Rajasthan, Ajmer, 305817, Rajasthan, India.
Ramesh ChandraDepartment of Chemistry, University of Delhi, Delhi, 110007, India. acbrdu@hotmail.com.
Abhinav GroverDepartment of Biotechnology, Jawahar Lal Nehru University, Delhi, 110067, India. abhinavgr@gmail.com.
Jawaharlal Nehru University · INUniversity of Delhi · INCentral University of Rajasthan · INJamia Hamdard · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Development of effective counteragents against the novel coronavirus disease (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strains, requires clear insights and information for understanding the immune responses associated with it. This global pandemic has pushed the healthcare system and restricted the movement of people and succumbing of the available therapeutics utterly warrants the development of a potential vaccine to contest the deadly situation. In the present study, highly efficacious, immunodominant cytotoxic T-lymphocyte (CTL) epitopes were predicted by advanced immunoinformatics assays using the spike glycoprotein of SARS-CoV2, generating a robust and specific immune response with convincing immunological parameters (Antigenicity, TAP affinity, MHC binder) engendering an efficient viral vaccine. The molecular docking studies show strong binding of the CTL construct with MHC-1 and host membrane specific TLR2 receptors. The molecular dynamics simulation in an explicit system confirmed the stable and robust binding of CTL epitope with TLR2. Steep magnitude RMSD variation and compelling residual fluctuations existed in terminal residues and various loops of the β linker segments of TLR2-epitope (residues 105-156 and 239-254) to about 0.4 nm. The reduced R

Indexed as

Computational BiologyComputer SimulationCOVID-19COVID-19 VaccinesEpitopes, T-LymphocyteHumansImmunogenicity, VaccineModels, MolecularSARS-CoV-2Spike Glycoprotein, CoronavirusT-Lymphocytes, CytotoxicToll-Like Receptor 2COVID-19 VaccinesEpitopes, T-LymphocyteSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2Toll-Like Receptor 2

Identifiers

PMID33828130
PMCPMC8027208
OpenAlexW3111344769

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.