ArticleHorticulture research2021
The chromosome-level Hemerocallis citrina Borani genome provides new insights into the rutin biosynthesis and the lack of colchicine.
Article in Horticulture research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed, 68 citations in OpenAlex.
- The chromosome-level genome of Hemerocallis middendorffii provides new insights into the floral scents and color biosynthesis in Chinese native daylily.BMC plant biology · 2025Article
- Flavonoid biomarkers and co-expression gene networks characterized in ten Hemerocallis citrina accessions via multi-omics.Scientific reports · 2025Article
- Genome-Wide Identification ofBiology · 2025Article
- Effects of different rehydration temperatures on rehydration and nutritional quality of dried daylily.PeerJ · 2025Article
- Petal stomata ofFrontiers in plant science · 2025Article
- Integrated metabolomic and transcriptomic analysis revealed the transition of functional components in edible flower buds ofFood chemistry: X · 2024Article
- Widely Targeted Metabolomics Analysis Revealed the Component Differences ofFoods (Basel, Switzerland) · 2024Article
- Genome-Wide Identification and Expression Analysis of the COL Gene Family inCurrent issues in molecular biology · 2024Article
- Genome-wide analysis of the SWEET gene family in Hemerocallis citrina and functional characterization of HcSWEET4a in response to salt stress.BMC plant biology · 2024Article
- Salicylic acid modulates secondary metabolism and enhanced colchicine accumulation in long yellow daylily (AoB PLANTS · 2024Article
- Codon usage characterization and phylogenetic analysis of the mitochondrial genome in Hemerocallis citrina.BMC genomic data · 2024Article
- The pan-plastome of Hemerocallis citrina reveals new insights into the genetic diversity and cultivation history of an economically important food plant.BMC plant biology · 2024Article
- Advances in research on the main nutritional quality of daylily, an important flower vegetable of Liliaceae.PeerJ · 2024Review
- Comparative analysis of chloroplast genome and evolutionary history ofFrontiers in genetics · 2024Article
- Lactation-promoting ingredients ofFrontiers in pharmacology · 2024Article
- Genome-wide identification of the NAC family inFrontiers in plant science · 2024Article
- Article
- Comparative analysis of flavonoid metabolites from different parts of Hemerocallis citrina.BMC plant biology · 2023Article
- Article
- Integration of mRNA and miRNA Analysis Reveals the Post-Transcriptional Regulation of Salt Stress Response inInternational journal of molecular sciences · 2023Article
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Authors and funding
12 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Hemerocallis citrina Borani (huang hua cai in Chinese) is an important horticultural crop whose flower buds are widely consumed as a delicious vegetable in Asia. Here we assembled a high-quality reference genome of H. citrina using single-molecule sequencing and Hi-C technologies. The genome assembly was 3.77 Gb and consisted of 3183 contigs with a contig N50 of 2.09 Mb, which were further clustered into 11 pseudochromosomes. A larger portion (3.25 Gb or 86.20%) was annotated as a repetitive content and 54,295 protein-coding genes were annotated in the genome. Genome evolution analysis showed that H. citrina experienced a recent whole-genome duplication (WGD) event at ~15.73 million years ago (Mya), which was the main factor leading to many multiple copies of orthologous genes. We used this reference genome to predict 20 genes involved in the rutin biosynthesis pathway. Moreover, our metabolomics data revealed neither colchicine nor its precursors in H. citrina, challenging the long-standing belief that this alkaloid causes poisoning by the plant. The results of our disruptive research are further substantiated by our genomic finding that H. citrina does not contain any genes involved in colchicine biosynthesis. The high-quality genome lays a solid foundation for genetic research and molecular breeding of H. citrina.
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Registered trials
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