ArticleBMC genomics2021
The draft genome of the specialist flea beetle Altica viridicyanea (Coleoptera: Chrysomelidae).
Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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6 citing papers in PubMed.
- Article
- A near-complete genome assembly of Monochamus alternatus a major vector beetle of pinewood nematode.Scientific data · 2024Article
- A chromosome-level assembly of the seed beetle Callosobruchus maculatus genome with annotation of its repetitive elements.G3 (Bethesda, Md.) · 2024Article
- A draft Diabrotica virgifera virgifera genome: insights into control and host plant adaption by a major maize pest insect.BMC genomics · 2023Article
- Nutritional and metabolic process of the dung beetle Phelotrupes auratus depends on the plant ingredients that the herbivores eat.BMC genomics · 2022Article
- The Genome ofGenes · 2022Article
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11 authors.
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Abstract
backgroundAltica (Coleoptera: Chrysomelidae) is a highly diverse and taxonomically challenging flea beetle genus that has been used to address questions related to host plant specialization, reproductive isolation, and ecological speciation. To further evolutionary studies in this interesting group, here we present a draft genome of a representative specialist, Altica viridicyanea, the first Alticinae genome reported thus far.
resultsThe genome is 864.8 Mb and consists of 4490 scaffolds with a N50 size of 557 kb, which covered 98.6% complete and 0.4% partial insect Benchmarking Universal Single-Copy Orthologs. Repetitive sequences accounted for 62.9% of the assembly, and a total of 17,730 protein-coding gene models and 2462 non-coding RNA models were predicted. To provide insight into host plant specialization of this monophagous species, we examined the key gene families involved in chemosensation, detoxification of plant secondary chemistry, and plant cell wall-degradation.
conclusionsThe genome assembled in this work provides an important resource for further studies on host plant adaptation and functionally affiliated genes. Moreover, this work also opens the way for comparative genomics studies among closely related Altica species, which may provide insight into the molecular evolutionary processes that occur during ecological speciation.
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