Evidence map›Paper›PMID 33826189›Full record

ArticleProtein science : a publication of the Protein Society2021

Criticality of a conserved tyrosine residue in the SpeG protein from Escherichia coli.

Van Thi Bich Le, Joseph Dang, Ee Qi Lim, Misty L Kuhn

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
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  7. GLO1 Contributes to the Drug Resistance ofInfection and drug resistance · 2022
    Article
  8. Criticality of a conserved tyrosine residue in the SpeG protein from Escherichia coli.Protein science : a publication of the Protein Society · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Van Thi Bich LeDepartment of Chemistry and Biochemistry, San Francisco State University, San Francisco, California, USA.ORCID 0000-0003-3894-3963
Joseph DangDepartment of Chemistry and Biochemistry, San Francisco State University, San Francisco, California, USA.
Ee Qi LimDepartment of Chemistry and Biochemistry, San Francisco State University, San Francisco, California, USA.
Misty L KuhnDepartment of Chemistry and Biochemistry, San Francisco State University, San Francisco, California, USA.ORCID 0000-0002-7951-9141
San Francisco State University · US

Funding

Investigating the structure, function, and regulation of polyamine acetyltransferasesR35GM133506 · NIGMS · SAN FRANCISCO STATE UNIVERSITY · PI Misty Kuhn · 2019 to 2026
$2.9M
NIGMS NIH HHS R35 GM133506
6 · The paper itself

Abstract

The SpeG spermidine/spermine N-acetyltransferase (SSAT) from Escherichia coli belongs to the Gcn5-related N-acetyltransferase (GNAT) superfamily of proteins. In vitro characterization of this enzyme shows it acetylates the polyamines spermine and spermidine, with a preference toward spermine. This enzyme has a conserved tyrosine residue (Y135) that is found in all SSAT proteins and many GNAT functional subfamilies. It is located near acetyl coenzyme A in the active center of these proteins and has been suggested to act as a general acid in a general acid/base chemical mechanism. In contrast, a previous study showed this residue was not critical for E. coli SpeG enzymatic activity when mutated to phenylalanine. This result was quite different from previous studies with a comparable residue in the human and mouse SSAT proteins, which also acetylate spermine and spermidine. Therefore, we constructed several mutants of the E. coli SpeG Y135 residue and tested their enzymatic activity. We found this conserved residue was indeed critical for E. coli SpeG enzyme activity and may behave similarly in other SSAT proteins.

Indexed as

AcetyltransferasesAnimalsDiamine N-AcetyltransferaseEnzyme StabilityEscherichia coliEscherichia coli ProteinsHumansMiceTyrosineAcetyltransferasesDiamine N-AcetyltransferaseEscherichia coli ProteinsTyrosineGcn5-related N-acetyltransferasegeneral acidpolyamineSpeGspermidine/spermine N-acetyltransferase

Identifiers

PMID33826189
PMCPMC8138529
OpenAlexW3147002576

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.