Evidence map›Paper›PMID 33825709›Full record

ArticleActa crystallographica. Section D, Structural biology2021

Crystal structures of β-1,4-N-acetylglucosaminyltransferase 2: structural basis for inherited muscular dystrophies.

Jeong Yeh Yang, Stephanie M Halmo, Jeremy Praissman, Digantkumar Chapla, Danish Singh, Lance Wells, Kelley W Moremen, William N Lanzilotta

Open access · greenAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Jeong Yeh YangThe Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.ORCID 0000-0001-7898-1337
Stephanie M HalmoThe Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.
Jeremy PraissmanThe Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.
Digantkumar ChaplaThe Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.
Danish SinghThe Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.
Lance WellsThe Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.
Kelley W MoremenThe Complex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.ORCID 0000-0003-1768-582X
William N LanzilottaDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, GA 30602, USA.
University of Georgia · US

Funding

TR&D3. Approaches to Proteoglycan Function at Biochemical and Cellular LevelsP41GM103390 · NIGMS · UNIVERSITY OF GEORGIA · PI MOREMEN, KELLEY W. · 2012 to 2019
$14.5M
Structure and Function in alpha-Dystroglycan GlycosylationR01GM111939 · NIGMS · UNIVERSITY OF GEORGIA · PI Lance Wells · 2014 to 2026
$4.0M
Origin of N-Glycan Site-Specific HeterogeneityR01GM130915 · NIGMS · UNIVERSITY OF GEORGIA · PI KANNAN, NATARAJAN, MOREMEN, KELLEY W. · 2019 to 2022
$3.4M
Phase II SER-CAT Optimization: Acquisition of a next generation area detectorS10RR028976 · NCRR · UNIVERSITY OF GEORGIA · PI WANG, BI-CHENG · 2010 to 2010
$1.5M
Acquition of a microdiffractometer for SER-CATS10RR025528 · NCRR · UNIVERSITY OF GEORGIA · PI ROSE, JOHN PATRICK · 2009 to 2009
$414k
Acquisition of an X-ray Generator/Detector System to Support NIH ResearchS10OD021762 · OD · UNIVERSITY OF GEORGIA · PI ROSE, JOHN PATRICK · 2016 to 2016
$412k
NCRR NIH HHS S10 RR025528NCRR NIH HHS S10 RR028976NIGMS NIH HHS P41 GM103390NIGMS NIH HHS R01 GM111939NIGMS NIH HHS R01 GM130915NIH HHS S10 OD021762ODCDC CDC HHS S10 OD021762
6 · The paper itself

Abstract

The canonical O-mannosylation pathway in humans is essential for the functional glycosylation of α-dystroglycan. Disruption of this post-translational modification pathway leads to congenital muscular dystrophies. The first committed step in the construction of a functional matriglycan structure involves the post-translational modification of α-dystroglycan. This is essential for binding extracellular matrix proteins and arenaviruses, and is catalyzed by β-1,4-N-acetylglucosaminyltransferase 2 (POMGNT2). While another glycosyl transferase, β-1,4-N-acetylglucosaminyltransferase 1 (POMGNT1), has been shown to be promiscuous in extending O-mannosylated sites, POMGNT2 has been shown to display significant primary amino-acid selectivity near the site of O-mannosylation. Moreover, several single point mutations in POMGNT2 have been identified in patients with assorted dystroglycanopathies such as Walker-Warburg syndrome and limb girdle muscular dystrophy. To gain insight into POMGNT2 function in humans, the enzyme was expressed as a soluble, secreted fusion protein by transient infection of HEK293 suspension cultures. Here, crystal structures of POMGNT2 (amino-acid residues 25-580) with and without UDP bound are reported. Consistent with a novel fold and a unique domain organization, no molecular-replacement model was available and phases were obtained through crystallization of a selenomethionine variant of the enzyme in the same space group. Tetragonal (space group P42

Indexed as

Binding SitesDystroglycansGlycosylationGlycosyltransferasesHEK293 CellsHumansMuscular DystrophiesProtein BindingDAG1 protein, humanDystroglycansGlycosyltransferasesPOMGNT2 protein, humanmuscular dystrophyO-mannosylationPOMGNT2Walker–Warburg syndromeX-ray crystallographyα-dystroglycanβ-1,4-N-acetylglucosaminyltransferase 2

Identifiers

PMID33825709
PMCPMC8025878
OpenAlexW3150122551

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.