Evidence map›Paper›PMID 33825682›Full record

ArticleeLife2021

The metal cofactor zinc and interacting membranes modulate SOD1 conformation-aggregation landscape in an in vitro ALS model.

Achinta Sannigrahi, Sourav Chowdhury, Bidisha Das, Amrita Banerjee, Animesh Halder, Amaresh Kumar, Mohammed Saleem, Athi N Naganathan, Sanat Karmakar, Krishnananda Chattopadhyay

Open access · goldAbstract readComparative Study
In one paragraph

Article in eLife, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 35 citations in OpenAlex.

  1. Metallothionein and neurodegenerative diseases.Neural regeneration research · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Achinta Sannigrahi *Structural Biology & Bio-Informatics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India.ORCID 0000-0002-6037-2805
Sourav Chowdhury *Chemistry and Chemical Biology, Harvard University, Cambridge, United States.
Bidisha Das *Structural Biology & Bio-Informatics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India.
Amrita BanerjeeHiralal Mazumdar Memorial College for Women, Kolkata, India.
Animesh HalderDepartment of Physics, Jadavpur University, Kolkata, India.
Amaresh KumarSchool of Biological Sciences, National Institute of Science Education and Research (NISER), Bhubaneswar, India.
Mohammed SaleemSchool of Biological Sciences, National Institute of Science Education and Research (NISER), Bhubaneswar, India.
Athi N NaganathanDepartment of Biotechnology, Bhupat & Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, India.ORCID 0000-0002-1655-7802
Sanat KarmakarDepartment of Physics, Jadavpur University, Kolkata, India.ORCID 0000-0001-7627-8904
Krishnananda ChattopadhyayStructural Biology & Bio-Informatics Division, CSIR-Indian Institute of Chemical Biology, Kolkata, India.ORCID 0000-0002-1449-8909
Indian Institute of Chemical Biology · INJadavpur University · INNational Institute of Science Education and Research · INHarvard University · USIndian Institute of Technology Madras · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aggregation of Cu-Zn superoxide dismutase (SOD1) is implicated in the motor neuron disease, amyotrophic lateral sclerosis (ALS). Although more than 140 disease mutations of SOD1 are available, their stability or aggregation behaviors in membrane environment are not correlated with disease pathophysiology. Here, we use multiple mutational variants of SOD1 to show that the absence of Zn, and not Cu, significantly impacts membrane attachment of SOD1 through two loop regions facilitating aggregation driven by lipid-induced conformational changes. These loop regions influence both the primary (through Cu intake) and the gain of function (through aggregation) of SOD1 presumably through a shared conformational landscape. Combining experimental and theoretical frameworks using representative ALS disease mutants, we develop a 'co-factor derived membrane association model' wherein mutational stress closer to the Zn (but not to the Cu) pocket is responsible for membrane association-mediated toxic aggregation and survival time scale after ALS diagnosis.

Indexed as

Amyotrophic Lateral SclerosisBinding SitesCell Line, TumorCell MembraneCopperHumansKineticsModels, MolecularMutagenesis, Site-DirectedMutationNeuronsProtein AggregatesProtein Aggregation, PathologicalProtein BindingProtein ConformationProtein FoldingCopperProtein AggregatesSOD1 protein, humanSuperoxide Dismutase-1ZincaggregationALScofactorhumanmembranemolecular biophysicsneuro-degenerationstructural biology

Identifiers

PMID33825682
PMCPMC8087447
OpenAlexW3140867869

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.