Evidence map›Paper›PMID 33824368›Full record

ArticleScientific reports2021

iTRAQ-based proteome profiling revealed the role of Phytochrome A in regulating primary metabolism in tomato seedling.

Sherinmol Thomas, Rakesh Kumar, Kapil Sharma, Abhilash Barpanda, Yellamaraju Sreelakshmi, Rameshwar Sharma, Sanjeeva Srivastava

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Sherinmol ThomasProteomics Lab, Department of Biosciences and Bioengineering, IIT Bombay, Mumbai, Maharashtra, 400076, India.
Rakesh KumarRepository of Tomato Genomics Resources, Department of Plant Sciences, University of Hyderabad, Hyderabad, 500046, India.
Kapil SharmaRepository of Tomato Genomics Resources, Department of Plant Sciences, University of Hyderabad, Hyderabad, 500046, India.
Abhilash BarpandaProteomics Lab, Department of Biosciences and Bioengineering, IIT Bombay, Mumbai, Maharashtra, 400076, India.
Yellamaraju SreelakshmiRepository of Tomato Genomics Resources, Department of Plant Sciences, University of Hyderabad, Hyderabad, 500046, India.
Rameshwar SharmaRepository of Tomato Genomics Resources, Department of Plant Sciences, University of Hyderabad, Hyderabad, 500046, India.
Sanjeeva SrivastavaProteomics Lab, Department of Biosciences and Bioengineering, IIT Bombay, Mumbai, Maharashtra, 400076, India. sanjeeva@iitb.ac.in.
Indian Institute of Technology Bombay · INUniversity of Hyderabad · INCentral University of Karnataka · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In plants, during growth and development, photoreceptors monitor fluctuations in their environment and adjust their metabolism as a strategy of surveillance. Phytochromes (Phys) play an essential role in plant growth and development, from germination to fruit development. FR-light (FR) insensitive mutant (fri) carries a recessive mutation in Phytochrome A and is characterized by the failure to de-etiolate in continuous FR. Here we used iTRAQ-based quantitative proteomics along with metabolomics to unravel the role of Phytochrome A in regulating central metabolism in tomato seedlings grown under FR. Our results indicate that Phytochrome A has a predominant role in FR-mediated establishment of the mature seedling proteome. Further, we observed temporal regulation in the expression of several of the late response proteins associated with central metabolism. The proteomics investigations identified a decreased abundance of enzymes involved in photosynthesis and carbon fixation in the mutant. Profound accumulation of storage proteins in the mutant ascertained the possible conversion of sugars into storage material instead of being used or the retention of an earlier profile associated with the mature embryo. The enhanced accumulation of organic sugars in the seedlings indicates the absence of photomorphogenesis in the mutant.

Indexed as

CotyledonGene ExpressionGene Expression ProfilingGene Expression Regulation, PlantLightMetabolomicsPhotoreceptor CellsPhotosynthesisPhytochromePhytochrome APhytochrome BProteomeProteomicsSeedlingsSolanum lycopersicumTranscriptomePhytochromePhytochrome APhytochrome BProteome

Identifiers

PMID33824368
PMCPMC8024257
OpenAlexW3151544238

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.