Evidence map›Paper›PMID 33823806›Full record

ArticleBMC genomics2021

Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa.

Joanna Malukiewicz, Reed A Cartwright, Nelson H A Curi, Jorge A Dergam, Claudia S Igayara, Silvia B Moreira, Camila V Molina, Patricia A Nicola, Angela Noll, Marcello Passamani and 7 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 10 institutions in 4 countries.

Joanna MalukiewiczPrimate Genetics Laboratory, German Primate Center, Leibniz Institute for Primate Research, Göttingen, Germany. jmalukiewicz@dpz.eu.ORCID http://orcid.org/0000-0003-0494-1089
Reed A CartwrightSchool of Life Sciences and The Biodesign Institute, Arizona State University, Tempe, AZ, USA.
Nelson H A CuriEcologia, Epidemiologia e Medicina da Conservação, Departamento de Medicina Veterinária, Unilavras, Lavras, MG, Brazil.
Jorge A DergamDepartment of Animal Biology, Federal University of Viçosa, Viçosa, MG, Brazil.
Claudia S IgayaraGuarulhos Municipal Zoo, Guarulhos, SP, Brazil.
Silvia B MoreiraCentro de Primatologia do Rio de Janeiro, Guapimirim, RJ, Brazil.
Camila V MolinaPrograma de Interunidades em Biotecnologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, SP, Brazil.
Patricia A NicolaPrograma de Pós-Graduação, Ciências da Saúde e Biológicas, Universidade Federal do Vale do São Francisco, Petrolina, PE, Brazil.
Angela NollPrimate Genetics Laboratory, German Primate Center, Leibniz Institute for Primate Research, Göttingen, Germany.
Marcello PassamaniLaboratório de Ecologia e Conservação de Mamíferos, Departamento de Biologia, Universidade Federal de Lavras, Lavras, MG, Brazil.
Luiz C M PereiraCentro de Conservação e Manejo de Fauna da Caatinga, Universidade Federal do Vale do São Francisco, Petrolina, PE, Brazil.
Alcides PissinattiCentro de Primatologia do Rio de Janeiro, Guapimirim, RJ, Brazil.
Carlos R Ruiz-MirandaLaboratório das Ciências Ambientais, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense, Campos dos Goytacazes, RJ, Brazil.
Daniel L SilvaNúcleo de Pesquisas em Ciências Biológicas - NUPEB, Federal University of Ouro Preto, Ouro Preto, MG, Brazil.
Anne C StoneSchool of Human Evolution and Social Change, Arizona State University, Tempe, AZ, USA.ORCID https://orcid.org/0000-0001-8021-8314
Dietmar ZinnerCognitive Ethology Laboratory, German Primate Center, Leibniz Institute for Primate Research, Göttingen, Germany.ORCID https://orcid.org/0000-0003-3967-8014
Christian RoosPrimate Genetics Laboratory, German Primate Center, Leibniz Institute for Primate Research, Göttingen, Germany.ORCID https://orcid.org/0000-0003-0190-4266
German Primate Center · DEArizona State University · USUniversidade Federal do Vale do São Francisco · BRCentro Universitário de Lavras · BRGuarulhos University · BRState University of Norte Fluminense · BRUniversidade de São Paulo · BRUniversidade Federal de Lavras · BRUniversidade Federal de Ouro Preto · BRUniversidade Federal de Viçosa · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCallithrix marmosets are a relatively young primate radiation, whose phylogeny is not yet fully resolved. These primates are naturally para- and allopatric, but three species with highly invasive potential have been introduced into the southeastern Brazilian Atlantic Forest by the pet trade. There, these species hybridize with each other and endangered, native congeners. We aimed here to reconstruct a robust Callithrix phylogeny and divergence time estimates, and identify the biogeographic origins of autochthonous and allochthonous Callithrix mitogenome lineages. We sequenced 49 mitogenomes from four species (C. aurita, C. geoffroyi, C. jacchus, C. penicillata) and anthropogenic hybrids (C. aurita x Callithrix sp., C. penicillata x C. jacchus, Callithrix sp. x Callithrix sp., C. penicillata x C. geoffroyi) via Sanger and whole genome sequencing. We combined these data with previously published Callithrix mitogenomes to analyze five Callithrix species in total.

resultsWe report the complete sequence and organization of the C. aurita mitogenome. Phylogenetic analyses showed that C. aurita was the first to diverge within Callithrix 3.54 million years ago (Ma), while C. jacchus and C. penicillata lineages diverged most recently 0.5 Ma as sister clades. MtDNA clades of C. aurita, C. geoffroyi, and C. penicillata show intraspecific geographic structure, but C. penicillata clades appear polyphyletic. Hybrids, which were identified by phenotype, possessed mainly C. penicillata or C. jacchus mtDNA haplotypes. The biogeographic origins of mtDNA haplotypes from hybrid and allochthonous Callithrix were broadly distributed across natural Callithrix ranges. Our phylogenetic results also evidence introgression of C. jacchus mtDNA into C. aurita.

conclusionOur robust Callithrix mitogenome phylogeny shows C. aurita lineages as basal and C. jacchus lineages among the most recent within Callithrix. We provide the first evidence that parental mtDNA lineages of anthropogenic hybrid and allochthonous marmosets are broadly distributed inside and outside of the Atlantic Forest. We also show evidence of cryptic hybridization between allochthonous Callithrix and autochthonous C. aurita. Our results encouragingly show that further development of genomic resources will allow to more clearly elucidate Callithrix evolutionary relationships and understand the dynamics of Callithrix anthropogenic introductions into the Brazilian Atlantic Forest.

Indexed as

Biological EvolutionCallithrixAnimalsBrazilDNA, MitochondrialHumansPhylogenyDNA, MitochondrialAtlantic forestBrazilCallitrichidaeDivergenceMarmosetmtDNAPrimate

Identifiers

PMID33823806
PMCPMC8025498
OpenAlexW3146574726

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.