Evidence map›Paper›PMID 33823541›Full record

ArticleNucleic acids research2021

A phage satellite tunes inducing phage gene expression using a domesticated endonuclease to balance inhibition and virion hijacking.

Zoe Netter, Caroline M Boyd, Tania V Silvas, Kimberley D Seed

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Why do bacteria accumulate antiphage defence systems?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  3. Genetics, ecology and evolution of phage satellites.Nature reviews. Microbiology · 2025
    Review
  4. Review
  5. Article
  6. AJournal of bacteriology · 2024
    Article
  7. Article
  8. AbioRxiv : the preprint server for biology · 2024
    Article
  9. AeLife · 2024
    Article
  10. Engineering ofCells · 2023
    Article
  11. AbioRxiv : the preprint server for biology · 2023
    Article
  12. Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Zoe NetterDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
Caroline M BoydDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
Tania V SilvasDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
Kimberley D SeedDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0000-0002-0139-1600
University of California, Berkeley · USChan Zuckerberg Initiative (United States) · US

Funding

Genetic Dissection of Cells and Organisms Training ProgramT32GM132022 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Nicole King, NOAH K WHITEMAN · 2019 to 2026
$5.2M
Phage resistance and mobile genetic elements in Vibrio choleraeR01AI127652 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI SEED, KIMBERLEY DIANE · 2016 to 2025
$4.6M
Molecular mechanisms driving the coevolution of clinical isolates of phages and epidemic Vibrio choleraeR01AI153303 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI Kimberley Diane Seed · 2020 to 2026
$4.3M
NIAID NIH HHS R01 AI127652NIAID NIH HHS R01AI127652-S1NIAID NIH HHS R01 AI153303NIGMS NIH HHS T32 GM132022
6 · The paper itself

Abstract

Bacteria persist under constant threat of predation by bacterial viruses (phages). Bacteria-phage conflicts result in evolutionary arms races often driven by mobile genetic elements (MGEs). One such MGE, a phage satellite in Vibrio cholerae called PLE, provides specific and robust defense against a pervasive lytic phage, ICP1. The interplay between PLE and ICP1 has revealed strategies for molecular parasitism allowing PLE to hijack ICP1 processes in order to mobilize. Here, we describe the mechanism of PLE-mediated transcriptional manipulation of ICP1 structural gene transcription. PLE encodes a novel DNA binding protein, CapR, that represses ICP1's capsid morphogenesis operon. Although CapR is sufficient for the degree of capsid repression achieved by PLE, its activity does not hinder the ICP1 lifecycle. We explore the consequences of repression of this operon, demonstrating that more stringent repression achieved through CRISPRi restricts both ICP1 and PLE. We also discover that PLE transduces in modified ICP1-like particles. Examination of CapR homologs led to the identification of a suite of ICP1-encoded homing endonucleases, providing a putative origin for the satellite-encoded repressor. This work unveils a facet of the delicate balance of satellite-mediated inhibition aimed at blocking phage production while successfully mobilizing in a phage-derived particle.

Indexed as

Gene Expression Regulation, ViralInterspersed Repetitive SequencesBacterial ProteinsBacteriophagesBinding SitesCapsid ProteinsCRISPR-Cas SystemsDNA-Binding ProteinsDNA, SatelliteEndonucleasesOperonProtein DomainsTransduction, GeneticVibrio choleraeVirionBacterial ProteinsCapsid ProteinsDNA-Binding ProteinsDNA, SatelliteEndonucleases

Identifiers

PMID33823541
PMCPMC8096241
OpenAlexW3140559275

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.