Evidence map›Paper›PMID 33823130›Full record

ArticleDevelopmental cell2021

Single-cell resolution of lineage trajectories in the Arabidopsis stomatal lineage and developing leaf.

Camila B Lopez-Anido, Anne Vatén, Nicole K Smoot, Nidhi Sharma, Victoria Guo, Yan Gong, M Ximena Anleu Gil, Annika K Weimer, Dominique C Bergmann

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed, 1 pooled it
42.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 1 synthesis or guideline pooled it, 228 citations in OpenAlex.

  1. Pooled it
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  12. Cell cycle in plant development and reprogramming.Development (Cambridge, England) · 2026
    Review
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52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Camila B Lopez-AnidoDepartment of Biology, Stanford University, Stanford, CA 94305-5020, USA; Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305-5020, USA.
Anne VaténDepartment of Biology, Stanford University, Stanford, CA 94305-5020, USA.
Nicole K SmootHoward Hughes Medical Institute, Stanford University, Stanford, CA 94305-5020, USA.
Nidhi SharmaHoward Hughes Medical Institute, Stanford University, Stanford, CA 94305-5020, USA.
Victoria GuoHoward Hughes Medical Institute, Stanford University, Stanford, CA 94305-5020, USA.
Yan GongDepartment of Biology, Stanford University, Stanford, CA 94305-5020, USA.
M Ximena Anleu GilHoward Hughes Medical Institute, Stanford University, Stanford, CA 94305-5020, USA.
Annika K WeimerDepartment of Biology, Stanford University, Stanford, CA 94305-5020, USA.
Dominique C BergmannDepartment of Biology, Stanford University, Stanford, CA 94305-5020, USA; Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305-5020, USA. Electronic address: dbergmann@stanford.edu.
Stanford University · USHoward Hughes Medical Institute · US

Funding

High Throughput DNA Sequencer UpgradeS10OD018220 · OD · STANFORD UNIVERSITY · PI COLLER, JOHN · 2014 to 2014
$596k
Computer ClusterS10OD021763 · OD · STANFORD UNIVERSITY · PI JI, HANLEE P · 2016 to 2016
$481k
Dynamics of developmental strategies that drive cell identity and plasticityF32GM129918 · NIGMS · STANFORD UNIVERSITY · PI LOPEZ-ANIDO, CAMILA · 2018 to 2020
$126k
Howard Hughes Medical InstituteNIGMS NIH HHS F32 GM129918NIH HHS S10 OD018220NIH HHS S10 OD021763
6 · The paper itself

Abstract

Dynamic cell identities underlie flexible developmental programs. The stomatal lineage in the Arabidopsis leaf epidermis features asynchronous and indeterminate divisions that can be modulated by environmental cues. The products of the lineage, stomatal guard cells and pavement cells, regulate plant-atmosphere exchanges, and the epidermis as a whole influences overall leaf growth. How flexibility is encoded in development of the stomatal lineage and how cell fates are coordinated in the leaf are open questions. Here, by leveraging single-cell transcriptomics and molecular genetics, we uncovered models of cell differentiation within Arabidopsis leaf tissue. Profiles across leaf tissues identified points of regulatory congruence. In the stomatal lineage, single-cell resolution resolved underlying cell heterogeneity within early stages and provided a fine-grained profile of guard cell differentiation. Through integration of genome-scale datasets and spatiotemporally precise functional manipulations, we also identified an extended role for the transcriptional regulator SPEECHLESS in reinforcing cell fate commitment.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsCell Cycle ProteinsCell DifferentiationCell LineagePlant LeavesPlant StomataRNA-SeqSingle-Cell AnalysisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsCell Cycle ProteinsSPEECHLESS protein, ArabidopsisArabidopsisdevelopmental flexibilityleafscRNA-seqSPEECHLESSstomataWEE1

Identifiers

PMID33823130
PMCPMC8054824
OpenAlexW3141660627

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.