Evidence map›Paper›PMID 33821889›Full record

ArticleThe Biochemical journal2021

Abiological catalysis by myoglobin mutant with a genetically incorporated unnatural amino acid.

Subhash Chand, Sriparna Ray, Poonam Yadav, Susruta Samanta, Brad S Pierce, Roshan Perera

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Subhash ChandDepartment of Chemistry and Biochemistry, The University of Texas at Arlington, Arlington, TX, U.S.A.ORCID 0000-0002-2072-2743
Sriparna RayDepartment of Chemistry and Biochemistry, The University of Texas at Arlington, Arlington, TX, U.S.A.
Poonam YadavCHI Health, Creighton University Medical Center, Omaha, NE 68124, U.S.A.
Susruta SamantaDepartment of Chemistry, Manipal University Jaipur, Jaipur, Rajasthan 303007, India.
Brad S PierceDepartment of Chemistry and Biochemistry, The University of Alabama, Tuscaloosa, AL 35487, U.S.A.
Roshan PereraDepartment of Chemistry and Biochemistry, The University of Texas at Arlington, Arlington, TX, U.S.A.
The University of Texas at Arlington · USCHI Health Creighton University Medical Center - Bergan Mercy · USManipal University JaipurUniversity of Alabama · US

Funding

Pre-steady state kinetics and O2/NO-reactivity among thiol dioxygenase enzymesR15GM117511 · NIGMS · UNIVERSITY OF TEXAS ARLINGTON · PI PIERCE, BRADLEY S · 2015 to 2023
$1.2M
NIGMS NIH HHS R15 GM117511
6 · The paper itself

Abstract

To inculcate biocatalytic activity in the oxygen-storage protein myoglobin (Mb), a genetically engineered myoglobin mutant H64DOPA (DOPA = L-3,4-dihydroxyphenylalanine) has been created. Incorporation of unnatural amino acids has already demonstrated their ability to accomplish many non-natural functions in proteins efficiently. Herein, the presence of redox-active DOPA residue in the active site of mutant Mb presumably stabilizes the compound I in the catalytic oxidation process by participating in an additional hydrogen bonding (H-bonding) as compared to the WT Mb. Specifically, a general acid-base catalytic pathway was achieved due to the availability of the hydroxyl moieties of DOPA. The reduction potential values of WT (E° = -260 mV) and mutant Mb (E° = -300 mV), w.r.t. Ag/AgCl reference electrode, in the presence of hydrogen peroxide, indicated an additional H-bonding in the mutant protein, which is responsible for the peroxidase activity of the mutant Mb. We observed that in the presence of 5 mM H2O2, H64DOPA Mb oxidizes thioanisole and benzaldehyde with a 10 and 54 folds higher rate, respectively, as opposed to WT Mb. Based on spectroscopic, kinetic, and electrochemical studies, we deduce that DOPA residue, when present within the distal pocket of mutant Mb, alone serves the role of His/Arg-pair of peroxidases.

Indexed as

Amino Acid SubstitutionBiocatalysisCatalytic DomainCloning, MolecularDihydroxyphenylalanineEscherichia coliGene ExpressionGenetic VectorsHemeHistidineHumansHydrogen BondingHydrogen PeroxideIronKineticsModels, MolecularDihydroxyphenylalanineHemeHistidineHydrogen PeroxideIronMyoglobinPeroxidasesRecombinant Proteinsabiological catalysiselectrochemistryheme-centermyoglobinperoxidasesunnatural amino acid

Identifiers

PMID33821889
PMCPMC10071548
OpenAlexW3152093201

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.