Evidence map›Paper›PMID 33820138›Full record

ArticleOptics express2021

Adorym: a multi-platform generic X-ray image reconstruction framework based on automatic differentiation.

Ming Du, Saugat Kandel, Junjing Deng, Xiaojing Huang, Arnaud Demortiere, Tuan Tu Nguyen, Remi Tucoulou, Vincent De Andrade, Qiaoling Jin, Chris Jacobsen

Abstract read
In one paragraph

Article in Optics express, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Uncertainty-aware Fourier ptychography.Light, science & applications · 2025
    Article
  4. Ptychography at all wavelengths.Nature reviews. Methods primers · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ming Du
Saugat Kandel
Junjing Deng
Xiaojing Huang
Arnaud Demortiere
Tuan Tu Nguyen
Remi Tucoulou
Vincent De Andrade
Qiaoling Jin
Chris Jacobsen

Funding

Development of Sub 100 nm Resolution X-ray Nanotomography of Centimeter-Sized TissuesR01MH115265 · NIMH · NORTHWESTERN UNIVERSITY · PI JACOBSEN, CHRIS JOHNSON · 2018 to 2021
$1.5M
NIMH NIH HHS R01 MH115265
6 · The paper itself

Abstract

We describe and demonstrate an optimization-based X-ray image reconstruction framework called Adorym. Our framework provides a generic forward model, allowing one code framework to be used for a wide range of imaging methods ranging from near-field holography to fly-scan ptychographic tomography. By using automatic differentiation for optimization, Adorym has the flexibility to refine experimental parameters including probe positions, multiple hologram alignment, and object tilts. It is written with strong support for parallel processing, allowing large datasets to be processed on high-performance computing systems. We demonstrate its use on several experimental datasets to show improved image quality through parameter refinement.

Identifiers

PMID33820138
PMCPMC8237934

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.