Evidence map›Paper›PMID 33818909›Full record

Observational studyThe clinical respiratory journal2021

Clinical and etiological analysis of co-infections and secondary infections in COVID-19 patients: An observational study.

Shuyan Chen, Qing Zhu, Yanyu Xiao, Chi Wu, Zhaofang Jiang, Lei Liu, Jiuxin Qu

Open access · bronzeAbstract readObservational Study
In one paragraph

Observational study in The clinical respiratory journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 3 pooled it
3.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 3 syntheses or guidelines pooled it, 51 citations in OpenAlex.

  1. Pooled it
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  8. Mortality in hospitalized SARS-CoV-2 patients with contemporaneous bacterial and fungal infections.Antimicrobial stewardship & healthcare epidemiology : ASHE · 2024
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  17. Coronavirus disease 2019 (COVID-19) associated bacterial coinfection: Incidence, diagnosis and treatment.Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Shuyan ChenDepartment of Clinical Laboratory, Shenzhen Third People's Hospital, Southern University of Science and Technology, National Clinical Research Center for Infectious Diseases, Shenzhen, China.
Qing ZhuDepartment of Clinical Laboratory, Shenzhen Third People's Hospital, Southern University of Science and Technology, National Clinical Research Center for Infectious Diseases, Shenzhen, China.
Yanyu XiaoDepartment of Clinical Laboratory, Shenzhen Third People's Hospital, Southern University of Science and Technology, National Clinical Research Center for Infectious Diseases, Shenzhen, China.
Chi WuDepartment of Clinical Laboratory, Shenzhen Third People's Hospital, Southern University of Science and Technology, National Clinical Research Center for Infectious Diseases, Shenzhen, China.
Zhaofang JiangDepartment of Clinical Laboratory, Shenzhen Third People's Hospital, Southern University of Science and Technology, National Clinical Research Center for Infectious Diseases, Shenzhen, China.
Lei LiuDepartment of Clinical Laboratory, Shenzhen Third People's Hospital, Southern University of Science and Technology, National Clinical Research Center for Infectious Diseases, Shenzhen, China.
Jiuxin QuDepartment of Clinical Laboratory, Shenzhen Third People's Hospital, Southern University of Science and Technology, National Clinical Research Center for Infectious Diseases, Shenzhen, China.
Southern University of Science and Technology · CNShenzhen Third People’s Hospital · CN

Funding

Bill & Melinda Gates FoundationGuangdong Basic and Applied Basic Research Foundation (2020A1515010586)Guangdong Basic and Applied Basic Research Foundation 2020A1515010586Science and Technology program of Shenzhen (JCYJ20190809144005609)Science and Technology program of Shenzhen JCYJ20190809144005609Shenzhen Key Laboratory of BiochipSpecial Support Fund of Shenzhen for Introduced High-Level Medical Teamthe Special Support Fund of Shenzhen for Introduced High-Level Medical Team (SZSM201412005)the Special Support Fund of Shenzhen for Introduced High-Level Medical Team SZSM201412005
6 · The paper itself

Abstract

backgroundCo-infections, secondary bacterial or fungal infections, are important risk factors for poor outcomes in viral infections. The prevalence of co-infection and secondary infection in patients infected with SARS-CoV-2 is not well understood.

aimsTo investigate the role of co-infections and secondary infections in disease severity of hospitalized individuals with COVID-19. MATERIALS AND

methodsA retrospective study was carried out between 11 January 2020 and 1 March 2020 among 408 laboratory confirmed COVID-19 patients in China. These patients were divided into three groups based on disease severity: mild or moderate, severe, or critically ill. Microbiological pathogens in blood, urine, and respiratory tract specimens were detected by the combination of culture, serology, polymerase chain reaction, and metagenomic next-generation sequencing (mNGS).

resultsThe median age of participants was 48 years (IQR 34-60 years). Fifty-two patients (12.7%) had at least one additional pathogen, 8.1% were co-infected, and 5.1% had a secondary infection. There were 13 Mycoplasma pneumoniae cases, 8 Haemophilus influenzae cases, 8 respiratory viruses, and 3 Streptococcus pneumoniae cases, primarily detected in mild and moderate COVID-19 patients. Hospital-acquired infection pathogens were more common in critically ill patients. Compared to those without additional pathogens, patients with co-infections and/or secondary infections were more likely to receive antibiotics (p < 0.001) and have elevated levels of d-dimer (p = 0.0012), interleukin-6 (p = 0.0027), and procalcitonin (p = 0.0002). The performance of conventional culture was comparable with that of mNGS in diagnosis of secondary infections.

conclusionCo-infections and secondary infections existed in hospitalized COVID-19 patients and were relevant to the disease severity. Screening of common respiratory pathogens and hospital infection control should be strengthened.

Indexed as

CoinfectionCOVID-19Virus DiseasesAdultHumansMiddle AgedRetrospective StudiesSARS-CoV-2co-infectionCOVID-19etiologymNGSsecondary infection

Identifiers

PMID33818909
PMCPMC8250518
OpenAlexW3145217779

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.