Evidence map›Paper›PMID 33818129›Full record

ArticlePhysiological genomics2021

Hepatic transcriptional profile reveals the role of diet and genetic backgrounds on metabolic traits in female progenitor strains of the Collaborative Cross.

Myungsuk Kim, M Nazmul Huda, Annalouise O'Connor, Jody Albright, Blythe Durbin-Johnson, Brian J Bennett

Open access · greenAbstract read
In one paragraph

Article in Physiological genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
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  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Myungsuk KimDepartment of Nutrition, University of California, Davis, California.ORCID 0000-0002-5618-3040
M Nazmul HudaDepartment of Nutrition, University of California, Davis, California.
Annalouise O'ConnorNutrition Research Institute, University of North Carolina, Kannapolis, North Carolina.
Jody AlbrightNutrition Research Institute, University of North Carolina, Kannapolis, North Carolina.
Blythe Durbin-JohnsonBioinformatics Core, University of California, Davis, California.
Brian J BennettDepartment of Nutrition, University of California, Davis, California.ORCID 0000-0002-0766-3195
Western Human Nutrition Research Center · USDavid H. Murdock Research Institute · USUniversity of California, Davis · US

Funding

UNIV OF NORTH CAROLINA CLINICAL NUTRITION RESEARCH UNITP30DK056350 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Ian Michael Carroll · 1999 to 2026
$31.6M
Biological Mechanisms through which TMAO Promotes AtherosclerosisR01HL148110 · NHLBI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ALLAYEE, HOOMAN, SHIH, DIANA MOUHAN · 2020 to 2023
$2.5M
Systems Genetic Studies of TMAO regulation and AtherosclerosisR01HL128572 · NHLBI · U.S. AGRICULTURAL RESEARCH SERVICE · PI BENNETT, BRIAN JOSEPH · 2015 to 2019
$1.4M
NHLBI NIH HHS R01 HL128572NHLBI NIH HHS R01 HL148110NIDDK NIH HHS P30 DK056350NIH HHS P30DK056350NIH HHS R01HL128572
6 · The paper itself

Abstract

Mice have provided critical mechanistic understandings of clinical traits underlying metabolic syndrome (MetSyn) and susceptibility to MetSyn in mice is known to vary among inbred strains. We investigated the diet- and strain-dependent effects on metabolic traits in the eight Collaborative Cross (CC) founder strains (A/J, C57BL/6J, 129S1/SvImJ, NOD/ShiLtJ, NZO/HILtJ, CAST/EiJ, PWK/PhJ, and WSB/EiJ). Liver transcriptomics analysis showed that both atherogenic diet and host genetics have profound effects on the liver transcriptome, which may be related to differences in metabolic traits observed between strains. We found strain differences in circulating trimethylamine

Indexed as

DietAnimalsCollaborative Cross MiceDiet, AtherogenicFemaleGene Expression RegulationGene Regulatory NetworksGenetic BackgroundLiverMethylaminesMiceMice, Inbred C57BLNADPH Oxidase 4TriglyceridesMethylaminesNADPH Oxidase 4Nox4 protein, mouseTriglyceridestrimethyloxamineCollaborative Crossdietgenetic backgroundsmetabolic syndrometranscriptomics

Identifiers

PMID33818129
PMCPMC8424536
OpenAlexW3151438210

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.