Evidence map›Paper›PMID 33816095›Full record

ArticleSpatial statistics2022

A spatio-temporal model based on discrete latent variables for the analysis of COVID-19 incidence.

Francesco Bartolucci, Alessio Farcomeni

Abstract read
In one paragraph

Article in Spatial statistics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Francesco BartolucciUniversity of Perugia, Perugia, Italy.
Alessio FarcomeniUniversity of Rome "Tor Vergata", via Columbia, 2, 00133 Roma, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We propose a model based on discrete latent variables, which are spatially associated and time specific, for the analysis of incident cases of SARS-CoV-2 infections. We assume that for each area the sequence of latent variables across time follows a Markov chain with initial and transition probabilities that also depend on latent variables in neighboring areas. The model is estimated by a Markov chain Monte Carlo algorithm based on a data augmentation scheme, in which the latent states are drawn together with the model parameters for each area and time. As an illustration we analyze incident cases of SARS-CoV-2 collected in Italy at regional level for the period from February 24, 2020, to January 17, 2021, corresponding to 48 weeks, where we use number of swabs as an offset. Our model identifies a common trend and, for every week, assigns each region to one among five distinct risk groups.

Indexed as

Data augmentationHidden Markov modelsMCMCSARS-CoV-2Swabs

Identifiers

PMID33816095
PMCPMC7997863

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.